Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0070 ATGGGTTACGATTCGGATAGCCCCTCGCAGGATGGGAGGGACGAAGATGACGAGGAAGAATATGAGGAGTCTGGCAAGGGTAATCGTTTTCTTGGGTTCATGTTTGGAAATGTAGATAATTCTGGTGATCTTGATGTTGATTATCTTGATGAGGATGCAAAGGAGCATCTTTCTGCATTAGCTGATAAGCTGGGTCCATCACTGACAGATATAGATTTGTCAGGAAAATCACCACAAACACCACCTGACGTTGTTGAACAAGACTGTGATGAAAAAGCTGAAGATGCTGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGACAGAAGCTGCCAATGAAGAGGACTATTTATTGCCAAAAAAAGATTTTTTCTCTGCTGAAGCCTCTACTATATGTTTGGAATCCAAAGCATCTGTCTTTGATGATGAAAATTATGATGAAGAATCTGAAAAGGAGGAAGACTTTGTGAATGAGGATTCTAAAGTTGATAACATCCCTTTAGCTGGGGAGCAGGAAGAGAGTTTTGTAGATGCATCTAAAGAAGAGAGTTCTCTTGAACATGAATTACATGTTGACTCACCACAGACTGAAGAACTGGATGCTGATGTACAAAAACTTGAGGAGGAAGGGCCTGAAGTTCAGAAAAGGTCTATGGCTATGCCATTACCTGTTTTATATGTGGAAGATGGTGTGGCAATTTTACGCTTCTCTGAAATCTTTGGCATTCATGAACCTATCAGAAAGGGGGAAAGGAGAGAGCATCGACATTCTATTCCTAGAGATAGATACAAGTCTTTGGATTTAACTGATGATTTTGTCGAAGAGGATGAAGAGGAATTCCTCAAGGGCTTCTCCCAGAGTCTCTCACTTACTGAGCAGGTTTGTGTAGTTCGTAATGAGGTATCGGAAAGCAATGATGTTGACTTGGAGTGCCCAAAATTTGGATTTCTTCATGCGGATGCCTCAGTGGCCAGGAAAGATGATCAACAATCGAAAGACTCATGTCATAGTGCTGAACCAATGAAAGGGGATATTGCAGAAGATCACTCCTGGAAAGATCACCCTTTCAAATTTTGCAACTTTTATCCTCTTGATCAGCAAGACTGGGAAGATGAAATCCTTTGGGGCAATTCTCCTGTTCCAAGTCATAATAATGTTGAAAGCTGTGAAATTTCTGGACCTGAGTTGGGAGCTTCTGGTGGCAGTGAAATAGAAATTGAAAGTGGGGTCCAGAATATTCAGATGGAGCCTCAGATACTGGAGGATAAAGATCATAATGTCTTCATGTGCAGCTCTCCTGCCTCATTGGAGCCCTTTGGCTCAAGGGATTCTTCTGGAGCTAAGACCAATTTAATATCCAGAAGTTTATTTCATCCCCAACTTTTAAGGCTAGAATCCAGATCTGAAATGGATAGTTCTAGTCTTGCAGATGGAAGAGAGGCAGAGATATCTGAGCATAATCAAAGTGGTCAAGTAAAGCGTTTTACCAAGGTTATATCACAAAACAGAGACATGATGGAGGGCTCTTGGTTAGACAAGATAATATGGGAGGAGCTTGATCAGCCAAAGGTGAAACCAAAGCTTATCTTTGATCTTCAGGATGATCAAATGCACTTTGAAGTTTTAGATAGCAAGGATGGTACATGTCTTCACCTTCATGCCGGGGCTATGATTTTAAGTCGTTCTTTAAAATTAAGCAGTGGGGATGCTTCTGAGCTACCAGGACATGGAAGTCAATATGGATGGCGATATGTTGCTAATGACAAACACTATTCAAACCGTAAAACTTCTCAGCAATTGAAATCAAATTCCAAAAAACGCTCAGCTCATGGTGTCAAAGTTTTTCACTCACAACCTGCACTGAAGCTGCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCAAAAGCATTATGGTATCCCCATGACAATGAGGTGGCTGTCAAAGAAAGAGGGAAATTGCCAAAACAAGGACCCATGAAAATTATTATAAAGAGTTTGGGTGGCAAGGGGAGTAAACTGCATGTCAATGCTGAAGAAACTCTCTCTTCTGTTAAAGCAAAAGCTTCCAAAAAGTTAGAAACAGTCAAAATATTTTATTTAGGGAGGGAGCTTGAAGATCATGAGTCACTTGCTGCACAAAATGTTCAACCAAACTCCTTGTTACATCTTGTTCGTACAAAGATACATTTGTGGCCAAAAGCACAAAGGGTTCCTGGTGAGAACAAATCTTTGCGTCCTCCTGGGGCATTCAAGAAAAAGTCTGACATGTCTGTGAAAGATGGACATCTTTTTCTGATGGAGTATTGTGAAGAAAGGCCTTTACTTTTGAGCAATGTTGGAATGGGTGCAAGACTTTGTACATACTATCAAAAATGCTCACCGGATGACCAATCTGGCTCTCTATTACGCAACACAGACAGTAGCTTGGGACACATTATTTCCCTGGATCCTGCTGATAAATCTCCTTTTCTTGGAGATTTAAAACCTGGTTGCAGTCAGTCATCAATTGAGACAAATATGTATAGAGCACCTGTATTTCCTCATAAAGTTCCATTAACTGACTACCTGCTGGTTCGTTCATCAAAGGGAAAGCTATCATTAAGGCGCATTGATAAAATTAATGTTGTCGGACAGCAGGAGCCTCTCATGGAAGTATTATCACCTGGAAGTAAAAATCTTCAGACTTACATGATGAACAGGCTATTGGTACACATGTGCCGTGAATTCCAAGCAGCAGAGAAGCGGCATTTGCCTCCTTATATCCGTGTTGATGAATTCCTCTCACAGTTTCCTTACCAATCAGAAGCGTCATTCCGTAAGAAAGTCAAGGAATATGCCAATTTACAGAGGGGAACAAATGGACAGTCAATTTTGGTTAAAAAGCGAAATTTTCGCATGTGGTCCGAGGATGAATTGAGAAAAATGGTTACACCAGAGCTTGTTTGTGCCTATGAAAGCATGCAAGCTGGCCTTTACCGTCTAAAACATTTAGGAATAACTGAAACACACCCCACTCATATTTCATCTGCAATGAGTCGGCTTCCTGATGAAGCAATTGCATTGGCTGCTGCATCACACATTGAGAGGGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGTCAGGGTAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCATCTGGTCGTGGCATGGGTTTTAGCTATGCTCGGGCACCTCCAAAGGCACCTGTGTCTAGTGCAATGGTGAAGAAGAAAGCAGCTGCTAACCGTGGAGGTTCTACTGTTACTGGTACAGATGCTGATCTACGTAGATTAAGCATGGAGGCTGCACGAGAGGTTCTTATTAAGTTCAATGTTCCTGAGGAAGTCATTGCAAAACAAACTAGGTGGCATCGCATTGCTATGATTCGTAAACTTTCGAGTGAGCAAGCTGCATCTGGGGTTAAAGTTGATCCAACAACTATCAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGAGAGAAATGCCAGGAGATTTGGGATCGACAAGTTCAAAGTCTGTCATCTGTTAATGGTGATGAAAATGAGAGCGATTCAGAAGGGAATAGTGATTTAGATTCATTTGCTGGAGATCTGGAAAATTTACTTGATGCTGAGGAGTGTGAAGAGGGAGAAGAGGGTACCAATGACTTAAAACGTGATAAGGGAGATGGTGTTAAGGGTCTTAAAATGAGAAGACGCCCAACTTTAGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCAGCTGAGGCTGCTGAATTATGCAGGCTGCTTATGGATGATGATGAAGCTGACAAGAAGAAAAAGAAGAAAGCTAAGGTTATGGTGGGAGAAGCAAGATTGGTACCAAAGATGCAAGCAAAATTTTCCTTTGACAATGGTGAACAAGTTAAGCAAATAACAAATAATTTACAATTAGATGGAACTAATCACTTGAAAGAGGATGCAATCACAGATCTTAGGGAGGAGGAAAACTTTCCTGCTAAAAAAAGCAAATCACAGAAGGTCAATAAAGCCAAGAAGAATGATATTACACCTATTAGTATACCCAATAAAAAAATCAAATTGAATATGGGAGAAGGAATTAAGAATCAGGTGTTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGAGCATGTGGTAAGGCTGGGCACATGCGAACGAATAAGAACTGTCCAAAATATGGTGAAGATCTGGAAACTCAACTTGAATCTACAGACGTGGAAAAATCAACTGGAAAATCCAGCTTTGTGGATCCCCCTAGTCACTCCCAGCATAAAGCTCCCTCCAAAAAGTCAATGTCTAAAAGTGCAACAAAAGTTGCTCCTGTTGACAATTCAACAAAAATTCCATTGAAATTCAAATGCAGCTCCACAGAGAAATCTTCTGATAAACCTGCAATAGAAACCCTGCAGAGTTCTGACAAGCCTGTCACTTCTGACTCAGAAACTGCTAAGTCTGCTAAGGTTAATAAGATAATTATTCCCAAAAAAGTGAAACCAGATGATACGCAGGCTGAATCTCGTAAGCATGCTATTGTTATACGACCTCCTACTGATTCAGGTAGAAGGCAGGTTGATTCTCATAAGTTCCCAATTAAAATACGCCCGCCAACAGAAATAGATAGGGAGCAAAGTCACAAAAAGATTGTTATAAAACGTACAAGGGAAGTTATTGATCTGGAACTGGACAGTCCTGGTGGAAACACAGGAGGACTTCAACACAGAAAAACTAAAAGAATTGTTGAATTGTCGAATTTCGAGAAACAAAAAAAACAGGAGACTGTATATGGAACTGAAGGTTTTAAAAAATGGAACACTAAGGAGGACAGAAGATGGCAGGAAGATCCAGAGAAATGGAGAAATGATGCAAGGCTTCCAGAAGAAGACAGAGCAAGAAGGCACCACAAAGAAGAAATCAGGATGCTCAAAGAGCAAGAAAGGTTAGACGAGATAAAAAGATTTGAAGAAGATATTAGAAGAGAAAGGGAGGAGGAAGAACAACAAAAAGCTAAAAAGAAAAAGAAGAAGAAGAAGCCTGAGTTAAGAGATGAGTATTTAGATGACCCCAGAGCAAGAAGACATGACAAGAGAATGCCAGAAAGAGAGCAGAGTGGAAAAAGGAGATCTGTCACTGAGTTAGGAAAGATTGGTGCAGATTATATGCCGCCAACAAAACGCCGAAGAGGGGGAGGGGGAGAGGTTGGTTTGGCAAATATCTTGGAGGGCGTTGTGGACACCATTGTGAAAGATAGGTATGATCTGTCTTATCTTTTCTTGAAACCGGTGTCAAAGAAGGAGGCTCCTGACTACCTGGACATTATAGAGAGGCCTATGGATTTTTCCAGAATCAGGGAGAGGGTACGGAATATGGAGTACAAGAGCCGAGAAGATTTCCGACACGATGTCTGGCAGATTACTTACAATGCACATAAATACAACGACGGACGAAATCCAGGAATTCCTCCCCTTGCAGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGACGATAGCCTCACTGAAGCAGAAGCTGGCATTGAAAGTAGAGATTTCTAA 5661 0.4089 MGYDSDSPSQDGRDEDDEEEYEESGKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTPPDVVEQDCDEKAEDAVDYEDIDEEYDGPETEAANEEDYLLPKKDFFSAEASTICLESKASVFDDENYDEESEKEEDFVNEDSKVDNIPLAGEQEESFVDASKEESSLEHELHVDSPQTEELDADVQKLEEEGPEVQKRSMAMPLPVLYVEDGVAILRFSEIFGIHEPIRKGERREHRHSIPRDRYKSLDLTDDFVEEDEEEFLKGFSQSLSLTEQVCVVRNEVSESNDVDLECPKFGFLHADASVARKDDQQSKDSCHSAEPMKGDIAEDHSWKDHPFKFCNFYPLDQQDWEDEILWGNSPVPSHNNVESCEISGPELGASGGSEIEIESGVQNIQMEPQILEDKDHNVFMCSSPASLEPFGSRDSSGAKTNLISRSLFHPQLLRLESRSEMDSSSLADGREAEISEHNQSGQVKRFTKVISQNRDMMEGSWLDKIIWEELDQPKVKPKLIFDLQDDQMHFEVLDSKDGTCLHLHAGAMILSRSLKLSSGDASELPGHGSQYGWRYVANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKERGKLPKQGPMKIIIKSLGGKGSKLHVNAEETLSSVKAKASKKLETVKIFYLGRELEDHESLAAQNVQPNSLLHLVRTKIHLWPKAQRVPGENKSLRPPGAFKKKSDMSVKDGHLFLMEYCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDSSLGHIISLDPADKSPFLGDLKPGCSQSSIETNMYRAPVFPHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLSPGSKNLQTYMMNRLLVHMCREFQAAEKRHLPPYIRVDEFLSQFPYQSEASFRKKVKEYANLQRGTNGQSILVKKRNFRMWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPTHISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLIKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSSVNGDENESDSEGNSDLDSFAGDLENLLDAEECEEGEEGTNDLKRDKGDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDDDEADKKKKKKAKVMVGEARLVPKMQAKFSFDNGEQVKQITNNLQLDGTNHLKEDAITDLREEENFPAKKSKSQKVNKAKKNDITPISIPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGKAGHMRTNKNCPKYGEDLETQLESTDVEKSTGKSSFVDPPSHSQHKAPSKKSMSKSATKVAPVDNSTKIPLKFKCSSTEKSSDKPAIETLQSSDKPVTSDSETAKSAKVNKIIIPKKVKPDDTQAESRKHAIVIRPPTDSGRRQVDSHKFPIKIRPPTEIDREQSHKKIVIKRTREVIDLELDSPGGNTGGLQHRKTKRIVELSNFEKQKKQETVYGTEGFKKWNTKEDRRWQEDPEKWRNDARLPEEDRARRHHKEEIRMLKEQERLDEIKRFEEDIRREREEEEQQKAKKKKKKKKPELRDEYLDDPRARRHDKRMPEREQSGKRRSVTELGKIGADYMPPTKRRRGGGGEVGLANILEGVVDTIVKDRYDLSYLFLKPVSKKEAPDYLDIIERPMDFSRIRERVRNMEYKSREDFRHDVWQITYNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSLTEAEAGIESRDF 1886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0070 1886 SMART bromo_6 1761 1872 IPR001487 GO:0005515
Aed6g0070 1886 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Aed6g0070 1886 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1391 1881 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Aed6g0070 1886 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 15 1294 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Aed6g0070 1886 MobiDBLite consensus disorder prediction 144 163 - -
Aed6g0070 1886 MobiDBLite consensus disorder prediction 169 201 - -
Aed6g0070 1886 MobiDBLite consensus disorder prediction 66 91 - -
Aed6g0070 1886 Pfam Ubiquitin family 671 736 IPR000626 GO:0005515
Aed6g0070 1886 PRINTS Bromodomain signature 1833 1852 IPR001487 GO:0005515
Aed6g0070 1886 PRINTS Bromodomain signature 1785 1798 IPR001487 GO:0005515
Aed6g0070 1886 PRINTS Bromodomain signature 1815 1833 IPR001487 GO:0005515
Aed6g0070 1886 PRINTS Bromodomain signature 1799 1815 IPR001487 GO:0005515
Aed6g0070 1886 Gene3D - 651 736 - -
Aed6g0070 1886 MobiDBLite consensus disorder prediction 1691 1744 - -
Aed6g0070 1886 MobiDBLite consensus disorder prediction 471 491 - -
Aed6g0070 1886 Coils Coil 1676 1716 - -
Aed6g0070 1886 PANTHER BNAA01G26290D PROTEIN 1391 1881 - -
Aed6g0070 1886 PANTHER BNAA01G26290D PROTEIN 15 1294 - -
Aed6g0070 1886 MobiDBLite consensus disorder prediction 473 490 - -
Aed6g0070 1886 ProSitePatterns Bromodomain signature. 1787 1844 IPR018359 -
Aed6g0070 1886 CDD Bromodomain 1771 1867 - -
Aed6g0070 1886 Pfam Bromodomain 1773 1848 IPR001487 GO:0005515
Aed6g0070 1886 ProSiteProfiles Bromodomain profile. 1782 1852 IPR001487 GO:0005515
Aed6g0070 1886 Gene3D - 22 68 IPR036741 -
Aed6g0070 1886 MobiDBLite consensus disorder prediction 1242 1270 - -
Aed6g0070 1886 MobiDBLite consensus disorder prediction 1 30 - -
Aed6g0070 1886 Pfam TATA box-binding protein binding 18 61 IPR009067 -
Aed6g0070 1886 MobiDBLite consensus disorder prediction 177 201 - -
Aed6g0070 1886 SMART ubq_7 669 736 IPR000626 GO:0005515
Aed6g0070 1886 SUPERFAMILY Ubiquitin-like 639 734 IPR029071 -
Aed6g0070 1886 MobiDBLite consensus disorder prediction 1434 1579 - -
Aed6g0070 1886 Gene3D - 1682 1885 IPR036427 GO:0005515
Aed6g0070 1886 MobiDBLite consensus disorder prediction 1204 1224 - -
Aed6g0070 1886 MobiDBLite consensus disorder prediction 1526 1579 - -
Aed6g0070 1886 Pfam Protein of unknown function (DUF3591) 589 1150 IPR022591 -
Aed6g0070 1886 Coils Coil 1266 1286 - -
Aed6g0070 1886 MobiDBLite consensus disorder prediction 1711 1744 - -
Aed6g0070 1886 MobiDBLite consensus disorder prediction 1637 1677 - -
Aed6g0070 1886 SUPERFAMILY Bromodomain 1753 1876 IPR036427 GO:0005515
Aed6g0070 1886 MobiDBLite consensus disorder prediction 1351 1373 - -
Aed6g0070 1886 MobiDBLite consensus disorder prediction 1237 1271 - -
Aed6g0070 1886 MobiDBLite consensus disorder prediction 1439 1475 - -
Aed6g0070 1886 ProSiteProfiles Ubiquitin domain profile. 669 734 IPR000626 GO:0005515
Aed6g0070 1886 MobiDBLite consensus disorder prediction 1482 1518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0070 Aed-Chr6 793908 811730 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0070 669 734 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.571 6.18e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0070 K03125 - gmx:100780733 3363.93