Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0064 ATGTCTAGTTCTTCTCTACAAAGTCTGTACTTGGAGAAATGTAAGGAAGACTTACTAAGTTCAATTCATAAACTCAGTAGTCTTCAAACCTTGTGCGTTGGGGAAAATGAAGAGTTAACACGCTTTCCAGATGGGATGCTACAAAATATGACTGCCTTGAAGAGGTTATCTTTCTGGAATCTTTCCAATATAGAATCCTTGCCTGATTGTTTTGGAGACCTTCCCTCGCTTCGCCAATTATCTATTGAAGGATGTTGGAACAAGGCACGTGGTTCTCTCAAAAATGAAACAGAGGGGACATCATCACAGACAGATGAAGTTTCATCCAAGCTGTCTAGTTTCAACTTAAGGCATCGTGCATTGGGATTGACGGAGCCACCCGACATTGAACGATGGCATAGTCTTATTCAGATAGAATTGATGGACAATCAAATATGTGAACTACCACAATCACCAAATTGCCCTAAACTCAAAGTGTTGTTATTGCAGGGCAATGTTGATTTGATGGATATCTCGGACTCATTTTTCAACCACATGCCTTTGCTTCAACACCTTGACTTATCCTACACTAGTATAAGAGATTTACCCCCCTCCGTGTCTAAATTAATACAACTTAAGAAATTTTATCTTAGAGGTTGTGATCTCTTCATGGAACTACCACCGCAAATTGGACAGCTAAAGAATCTTAAAGAGCTTGATCTTGATGGGACTTTGATTACCCATCTGTCAAAGGAGATTGGCGAACTGATCAACCTGCAAAGCTTAACCCTCTGCTTTGATGCATACCATCATGGCAAAAAAGGCAAGCAAATTTCCAAGTCAACAATTATTCCTCCAGGGTTGATATCAAATCTTACTCAGTTGAAATATTTAAGCATCAACGTTGACCCTGAAGATGAGCAATGGAATGAGGATGTTAACAGGGTTTTGGTGGAAATTTTTGGTTTAGAGAGGTTAGAGACCGTGAGCATATATGTCCCTGAGGCTGAACTGTTGGAACTCATACCAGCTCAAATATCTCTCAGTTTCAGATTAGTTGTTGGTCATCATTTACAACGTTTCATATCGCGTGTAACACCTATGGTAGAGCAAGAATTCAAACGTTGTGGCTATAGTTTAAAATTTGTTAATGGTGTAGGTGTTCCAATTGGAGTGAAAATGAATCTTGAGCACTTCAAGGCCTTGTACCTGGACCGACATATGACCATCAAGAGTCTGTCTGATTTTGAGTTGAGAAATTTATGCGGGTTGGAAGTATGCATATTGGCCGAATGTAATAAAATGGAAACAATTGTCGATGGAGGCAATTTACATGATGGGCCTGTTCTTTCAAATTTGGAGTTTTTGAGTGCATTCTATATGAAGAATTTAAGAAGCATCTGTGAAGGACCTAACCCCTCCTTTCTCCACTTGAAGTCTATAGCATTGCACACTTGCCCGATGTTGACTACTGTCTTCACCATAGATTCTCTTCAGAACCTTTCCTCATTGGAGAGTCTTTCCAAATCAGAGTTGTCAAGCAAATATTTGAATGTCATTCAAGGAGAAAGCATGTGGTGGGAAGCATTGAAATGGAATGCAGCAGAGTGGGGAGATGCTGGCACTATGAACCATCTAGCTGCACTTGAAGAAACTCAACTAAATGAATATCACAATACAAGGTATCAGAGAATTTCAAGTTCTACACAGTCAATAGCAAAGTCATCTTTGGAAACACCTGTTTCGTCACCTTTAGCCCCAGTTTCAGTTCTGGGTAGCTCAAAAGGTGAAGCCCAAACGCAGGAAGACGTTACTGAGCGAAAAATAGTTCAAGCAGTACCAAAAAAGACGTCACTTAAAGATACCTTGGCTGCTGTCAGAAATGTAACTCAGGCAGCTGCGCGGATACAATCTGCTTTTCGCTCACATTCTTTTAGAAAACAGAGAGCAAGAGAAGCAGGTGCTAGCGCGGGTGGCATTGGTTGGAAAGGTTGCAAAGATTTCTTAACATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGCTACCAGGTTAGGAAGCATTACAAAGTAATATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTACGATGGAGGAGAAAAGGACCTGGTTTACAAGGTTTCAGACAAGAGATGGACATGAATATGAATGAAAATGAAGATGAAGACATCCTCAAGGTGTTTCGAAAACAGAAAGTGGATGCCGAACTTGCGGGTACGAGTGACGAAGTATCATTATCAACATCTGTAGAAGATGCTGCCTTATTTATGGATGATCTTTATCCATTCCCCTGGGAGCAACGCTAG 2313 0.4086 MSSSSLQSLYLEKCKEDLLSSIHKLSSLQTLCVGENEELTRFPDGMLQNMTALKRLSFWNLSNIESLPDCFGDLPSLRQLSIEGCWNKARGSLKNETEGTSSQTDEVSSKLSSFNLRHRALGLTEPPDIERWHSLIQIELMDNQICELPQSPNCPKLKVLLLQGNVDLMDISDSFFNHMPLLQHLDLSYTSIRDLPPSVSKLIQLKKFYLRGCDLFMELPPQIGQLKNLKELDLDGTLITHLSKEIGELINLQSLTLCFDAYHHGKKGKQISKSTIIPPGLISNLTQLKYLSINVDPEDEQWNEDVNRVLVEIFGLERLETVSIYVPEAELLELIPAQISLSFRLVVGHHLQRFISRVTPMVEQEFKRCGYSLKFVNGVGVPIGVKMNLEHFKALYLDRHMTIKSLSDFELRNLCGLEVCILAECNKMETIVDGGNLHDGPVLSNLEFLSAFYMKNLRSICEGPNPSFLHLKSIALHTCPMLTTVFTIDSLQNLSSLESLSKSELSSKYLNVIQGESMWWEALKWNAAEWGDAGTMNHLAALEETQLNEYHNTRYQRISSSTQSIAKSSLETPVSSPLAPVSVLGSSKGEAQTQEDVTERKIVQAVPKKTSLKDTLAAVRNVTQAAARIQSAFRSHSFRKQRAREAGASAGGIGWKGCKDFLTLRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGPGLQGFRQEMDMNMNENEDEDILKVFRKQKVDAELAGTSDEVSLSTSVEDAALFMDDLYPFPWEQR 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0064 770 PANTHER PROTEIN LAP1-LIKE 124 500 - -
Aed6g0064 770 Pfam Leucine rich repeat 27 85 IPR001611 GO:0005515
Aed6g0064 770 Pfam Leucine rich repeat 155 215 IPR001611 GO:0005515
Aed6g0064 770 SUPERFAMILY L domain-like 126 507 - -
Aed6g0064 770 Gene3D - 653 689 - -
Aed6g0064 770 Gene3D Ribonuclease Inhibitor 372 568 IPR032675 -
Aed6g0064 770 ProSiteProfiles IQ motif profile. 664 689 IPR000048 GO:0005515
Aed6g0064 770 ProSiteProfiles IQ motif profile. 623 651 IPR000048 GO:0005515
Aed6g0064 770 Pfam IQ calmodulin-binding motif 666 685 IPR000048 GO:0005515
Aed6g0064 770 Gene3D Ribonuclease Inhibitor 1 98 IPR032675 -
Aed6g0064 770 Gene3D Ribonuclease Inhibitor 99 339 IPR032675 -
Aed6g0064 770 SMART LRR_typ_2 179 202 IPR003591 -
Aed6g0064 770 SMART LRR_typ_2 25 49 IPR003591 -
Aed6g0064 770 SMART LRR_typ_2 226 249 IPR003591 -
Aed6g0064 770 SUPERFAMILY L domain-like 5 150 - -
Aed6g0064 770 PANTHER - 124 500 - -
Aed6g0064 770 SMART iq_5 621 643 IPR000048 GO:0005515
Aed6g0064 770 SMART iq_5 663 685 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0064 Aed-Chr6 722171 727515 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0064 520 753 CAMTA Transcription Factor Family AT1G67310 43.253 9.20e-35 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0064 - - ccaj:109801774 605.905