Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0047 ATGGTGTACGTGAAGGCTCAGAAGTCAAGAGCCTACTTCAAGAGGTATCAAGTTAAGTTCAAGAGAAGAAGAGGTATTCCTTTTCTTATTCGCTCATTTCGTTTTGTTTCGTCGTGTTCAATGCTGCATACTTTGTTCATAACGGCGGTTTTGTTTTCTGCAGAGGGAAAAACCGATTACCGTGCCAGGATTAGGTTGATTAACCAGGACAAGAATAAATACAATACCCCGAAGTACCGCTTCGTCGTTCGTTTTACAAATAAGGATATCATCGCACAAATAACATCTGCTAGCATCGCTGGTGATATTGTTCTTGCTGCGGCATATTCACATGAGCTACCGCGATATGGTCTTGAAGTAGGGCTTACAAATTATGCTGCTGCTTATTGTACTGGGCTACTGTTGGCCCGAAGAGTCCTGAAAACACTTGAAATGGATGAGGAGTATGAAGGAAACGTAGAGGGAGCTCTGGATGGGGGTTTGGACATCCCTCACAGTGACAAGAGGTTTGCTGGGTTTGATAAGGAGAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTTTTTGGTGGACATATCTTGGCAGAAGATGAACCAGAAAAATACCAGACACACTTCAGTGAATACATCAAGCGTGGAATAGAAGCTGATGGTGTTGAGGCACTGTACAAGAAGGTTCATGCTGCCATTCGTGCTGATCCTAATCTCAAGAAATCTGCGAAAGAGCCACCAAAGCAGCATAAGAGGTATAATTTGAAGAAACTCACTTATGAGGAAAGGAAGGCTAAGTTAATTGCACGGGTGGATGCTCTCAACTCTGCTGTCGATGACGATGAAGATGACGACTGA 852 0.4354 MVYVKAQKSRAYFKRYQVKFKRRRGIPFLIRSFRFVSSCSMLHTLFITAVLFSAEGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQITSASIAGDIVLAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYVFGGHILAEDEPEKYQTHFSEYIKRGIEADGVEALYKKVHAAIRADPNLKKSAKEPPKQHKRYNLKKLTYEERKAKLIARVDALNSAVDDDEDDD 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0047 283 Gene3D - 53 153 - -
Aed6g0047 283 Gene3D - 154 276 - -
Aed6g0047 283 PANTHER - 154 282 - -
Aed6g0047 283 PANTHER - 1 24 - -
Aed6g0047 283 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 55 153 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed6g0047 283 PANTHER RIBOSOMAL PROTEIN L5-RELATED 54 155 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed6g0047 283 PANTHER - 54 155 - -
Aed6g0047 283 PANTHER RIBOSOMAL PROTEIN L5-RELATED 154 282 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed6g0047 283 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 24 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed6g0047 283 PRINTS Ribosomal protein L5 signature 73 92 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed6g0047 283 PRINTS Ribosomal protein L5 signature 50 69 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed6g0047 283 PRINTS Ribosomal protein L5 signature 114 134 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Aed6g0047 283 CDD Ribosomal_L18_L5e 71 161 - -
Aed6g0047 283 Pfam Ribosomal L18 C-terminal region 220 273 IPR025607 -
Aed6g0047 283 SUPERFAMILY Translational machinery components 55 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0047 Aed-Chr6 582602 586911 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0047 1 275 Cytoplasmic Ribosomal Protein Gene Family AT3G25520 63.750 8.42e-137 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0047 K02932 - gmx:100805868 441.425