Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0041 ATGGAGGAGGGAAGTTCCGATTGCGACAATGAGAGGGACCGAATCCGCAACATCTGCATCCTCGCGCACGTGGACCACGGCAAGACGACCCTCGCCGACCACCTGATCGCCGCCGCGGGAGGCGGCGTCGTCCACCCGAAGCTCGCCGGTCGCGTCCGCTTCATGGACTACCTCGACGAGGAGCAGCGGCGCGCCATCACGATGAAGAGCTCCTCCATCCTCCTCCGCCACAACCGCCACGCCGTGAACCTGATCGATTCCCCCGGCCACATCGACTTCTGCAGCGAGGTCTCCACGGCGGCGCGTCTCAGCGACGGCGCCCTCCTCCTCGTCGACGCTGTGGAGGGCGTCCACATCCAGACCCACGCCGTCCTCCGCCAGTGCTGGATCGAGCGCCTCACCCCCTGCCTTGTCCTCAACAAACTCGACCGCTTAATCACCGAACTCAAACTCACCCCCTCCGAGGCCTACACGCGCCTCTTACGCATCGTCCACGAGGTCAACGGAATAGTCAGCGCTTACAAATCGGAAAAGTATCTCTCCGACGTGGATTCCCTCCTCGCCGGCACCAGCACCTCCGGCACCACTGGCGAGACTCTCGAGGACTACGACGATAATGAAGACGTCTTTCAGCCGCAGAAAGGGAATGTTATATTCGCTTGCGCTTTGGACGGTTGGGGTTTCGGGATTCGAGAGTTTGCGGAGATTTACGCTTCTAAGCTTGGTGCGAGTGTGAATGCATTGTTGAGGGCGTTGTGGGGCCCAAGGTATTATAACCCTAAGACGAAGATGATTGCTGGGAAGAAAGGGGTTGTTGGTAGTAATAAGAAGCCTATGTTTGTTCAGTTTGTGTTGGAGCCGTTGTGGCAGGTTTATCAGGGGGCGTTGGAAGGGGATAAGGGATTGGTTGAGAAGGTTATCAGGACGTTTAGTTTGTCGGTGCCGCAGAGGGAGCTGCAGAATAAGGATGTGAAGGTAGTGCTTCAGGCGGTTATGAGTCGGTGGCTTCCGCTCTCTGAGGCGGTTTTGTCGATGGTGGTTAGGTGTTTGCCAGACCCGGTCACCGCCCAGGCTTTTAGGATATCGAGGTTGATTCCGAAGAGGGAGGTTGTTGTTGGGGATTCGGAGGAGGGGGTGGTGGAGGAGGCAGAGTTGGTGAGGAAGGCGGTGGAGGAGTGTGATTGGAGGGATGAGGCTCCTTGTGTGGCTTTCGTGTCGAAGATGTTTGCTGTGCCGGTTAAGATGCTGCCTGGACAGAGGGGGGTGGTTGGGAATGGTTATGGTGATGAAGGAGAGGCTGACTCGGATGAGTGTTTTTTGGCATTTGCTAGAATTTTTAGTGGGGTTTTGTATGCAGGGCAGAGGATTTTTGTGCTTTCTGCAATGTATGATCCGGTGAAAGGGGAGTTGATGCAGAAGCATATACAGGAAGTGGAGTTGAAATCTCTGTATTTGATGATGGGGCAAGGGTTGAAAGTAGTGACACATGCCAAGGCAGGGAATATTGTTGCCATTGCAGGCCTTGGGCAGCATATATTGAAGAGTGCTACTCTTTCTTCCACTAGGAACTGTTGGCCTTTATCGAGTATGGCGTTCCAAGTTGCCCCAACTTTGAGAGTTGCAATTGAACCGTCCGACCCTGCTGATGTGGGTGCGTTGCTCAAAGGCTTAAGGCTTTTGAACCGAGCTGATCCGTTTGTTGAGGTCACGGTGTCTGGGAGGGGAGAGCATGTTATTGCTGCTGCCGGGGAAGTTCATCTCGAGAGGTGCATAAAGGATTTAAAGGAGAGGTTTGCGAAGGTAGGCTTGGAGGTCTCTCCACCTCTCGTGTCCTACAAAGAAACTATTGAGGGAGATGTGTTGAATGTGATGGAAAATTTGAAAGTTCTTAGCAGGAGATCATCAGATTATGTTGAGAAAACAACACCCAATGGAAGATGTGTTGTTCGGGTGCAGGTGATGAAACTTCTACCTTCCTTGATGAAGGTGCTGGATGAAAGCTCTGATTTACTTGGAGATATTATTGGAGTAAAGTTGGGTCAGACTGTAAAAAGTTTGGAAACCCAGAGACCGAGTATTGTTGAAAATGATAACCCAGTTGAAGTGCTAAAAAAACGCATATTGGATGCAGTGGAGGGTGATATTTTGAGCAGGAATGAGAATGACAAGGACCATGCTGAGAAATGTAAACTGAAGTGGCTAAAGATTTTAAGGAGGATATGGTCACTTGGACCAAGGCAGATTGGTCCTAACATTCTCTTTACTCCTGATATCAAGGCAGAAAGCACCGATAGCTCTGTCTTAATACGTGGTTGTCCTCGCGTATCAGAAAGGTTGGACTTTGTGGCTGATTCTAGTATCAATGACTCGGTTGATGAGACGACATCTTCAAATGCAAACCCAGCTTTGTACATGGATGCAGAGCACCTTGAAAGTAGTGTTTTATCTGGATTCCAATTGGCCACTTCAGCTGGACCCTTGTGTGATGAACCAATGTGGGGTTTGGCATTTGTCATCGAGGCACGGTTATCTCCATTTTCAGGGCAGCATGATGAATCTGAATCGCACCAACAATCGGAGCAGTACGGCATCTTTGCAGGGCAGGTAATTGCAGCTGTCAAAGATGCCTGTAGAGCAGCTGTGCTTCAGAACAAACCACGGCTGGTGGAAGCAATGTATTTTTGTGAATTGAACACGCCTACTGAATATTTGGGTCCCATGTATGCTGTACTTTCCCGAAGACGGGCCCGAGTATTGAAGGAAGAGATGCAAGAAGGTTCCCCTTTCTTCACCGTGCATGCATACCTTCCTGTTTCTGAGAGCTTTGGTTTCGCGGATGAGCTCAGAAGGTGGACTTCTGGCGCTGCAAGTGCACTTCTTGTTCTTAGCCACTGGGAAGCACTTCCTGAGGATCCTTTCTTTGTACCTAAAACAGAAGAGGAAATTGAAGAGTTTGGAGATGGTTCTAGTGTTCTTCCTAACACAGCAAGAAAATTAATTAATGCAGTTAGACGGCGAAAGGGCCTTCCTGTGGAGGAAAAGGTAGTGCAGCATGGAACCAAGCAGAGGACACGGGCTCGTAAAGTTTGA 3090 0.5061 MEEGSSDCDNERDRIRNICILAHVDHGKTTLADHLIAAAGGGVVHPKLAGRVRFMDYLDEEQRRAITMKSSSILLRHNRHAVNLIDSPGHIDFCSEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLTPCLVLNKLDRLITELKLTPSEAYTRLLRIVHEVNGIVSAYKSEKYLSDVDSLLAGTSTSGTTGETLEDYDDNEDVFQPQKGNVIFACALDGWGFGIREFAEIYASKLGASVNALLRALWGPRYYNPKTKMIAGKKGVVGSNKKPMFVQFVLEPLWQVYQGALEGDKGLVEKVIRTFSLSVPQRELQNKDVKVVLQAVMSRWLPLSEAVLSMVVRCLPDPVTAQAFRISRLIPKREVVVGDSEEGVVEEAELVRKAVEECDWRDEAPCVAFVSKMFAVPVKMLPGQRGVVGNGYGDEGEADSDECFLAFARIFSGVLYAGQRIFVLSAMYDPVKGELMQKHIQEVELKSLYLMMGQGLKVVTHAKAGNIVAIAGLGQHILKSATLSSTRNCWPLSSMAFQVAPTLRVAIEPSDPADVGALLKGLRLLNRADPFVEVTVSGRGEHVIAAAGEVHLERCIKDLKERFAKVGLEVSPPLVSYKETIEGDVLNVMENLKVLSRRSSDYVEKTTPNGRCVVRVQVMKLLPSLMKVLDESSDLLGDIIGVKLGQTVKSLETQRPSIVENDNPVEVLKKRILDAVEGDILSRNENDKDHAEKCKLKWLKILRRIWSLGPRQIGPNILFTPDIKAESTDSSVLIRGCPRVSERLDFVADSSINDSVDETTSSNANPALYMDAEHLESSVLSGFQLATSAGPLCDEPMWGLAFVIEARLSPFSGQHDESESHQQSEQYGIFAGQVIAAVKDACRAAVLQNKPRLVEAMYFCELNTPTEYLGPMYAVLSRRRARVLKEEMQEGSPFFTVHAYLPVSESFGFADELRRWTSGAASALLVLSHWEALPEDPFFVPKTEEEIEEFGDGSSVLPNTARKLINAVRRRKGLPVEEKVVQHGTKQRTRARKV 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0041 1029 CDD eEF2_snRNP_like_C 890 969 - -
Aed6g0041 1029 Gene3D - 886 1020 - -
Aed6g0041 1029 Pfam Elongation factor Tu GTP binding domain 14 341 IPR000795 GO:0003924|GO:0005525
Aed6g0041 1029 SUPERFAMILY EF-G C-terminal domain-like 534 608 IPR035647 -
Aed6g0041 1029 CDD aeEF2_snRNP_like_IV 607 894 - -
Aed6g0041 1029 Pfam Elongation factor G C-terminus 888 972 IPR000640 -
Aed6g0041 1029 Pfam Elongation factor Tu domain 2 440 518 IPR004161 GO:0005525
Aed6g0041 1029 SUPERFAMILY Ribosomal protein S5 domain 2-like 610 889 IPR020568 -
Aed6g0041 1029 SUPERFAMILY Translation proteins 391 530 IPR009000 -
Aed6g0041 1029 Gene3D Translation factors 353 533 - -
Aed6g0041 1029 PRINTS GTP-binding elongation factor signature 99 110 IPR000795 GO:0003924|GO:0005525
Aed6g0041 1029 PRINTS GTP-binding elongation factor signature 135 144 IPR000795 GO:0003924|GO:0005525
Aed6g0041 1029 PRINTS GTP-binding elongation factor signature 17 30 IPR000795 GO:0003924|GO:0005525
Aed6g0041 1029 PRINTS GTP-binding elongation factor signature 63 71 IPR000795 GO:0003924|GO:0005525
Aed6g0041 1029 PRINTS GTP-binding elongation factor signature 83 93 IPR000795 GO:0003924|GO:0005525
Aed6g0041 1029 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 9 1028 - -
Aed6g0041 1029 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 13 245 IPR000795 GO:0003924|GO:0005525
Aed6g0041 1029 CDD EF2_snRNP_III 536 607 - -
Aed6g0041 1029 SMART EFG_C_a 887 976 IPR000640 -
Aed6g0041 1029 Gene3D Yeast translation eEF2 (G' domain) 230 336 - -
Aed6g0041 1029 Gene3D - 6 214 IPR027417 -
Aed6g0041 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 351 IPR027417 -
Aed6g0041 1029 CDD EF2 16 238 - -
Aed6g0041 1029 CDD EF2_II 400 521 - -
Aed6g0041 1029 SUPERFAMILY EF-G C-terminal domain-like 890 988 IPR035647 -
Aed6g0041 1029 Gene3D - 632 884 IPR014721 -
Aed6g0041 1029 Gene3D Elongation Factor G (Translational Gtpase), domain 3 535 611 - -
Aed6g0041 1029 PANTHER - 9 1028 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0041 Aed-Chr6 552632 555721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0041 9 1029 Eukaryotic Initiation Factors Gene Family AT3G22980 70.845 0.0 1463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0041 K14536 - gmx:100775257 1860.11