Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0026 ATGAGAAGGGCCTTGGCCACTTCTTCTAGGAACGTTTTGTTGCACGCTAGTAGTGTCAAACCTAAACATGGTTCTCTAACCCTCTCTAGCATTGGTTTTCAAACTGAAACTGAGCCATTGGGTTCACCCTCTGAGAATCTCAAGAGCAAAGGAAAGCCTTTTGACATTAACGAGGATAAGAAGAAGAAGAAAACTTTTCAGGTTCTAGAGAAACAGCAAATTGAGTCTGCCCCTTTTGCTGCAAATTCGTTTTCTGAACTTGGCCTCCCACATAGGTTGATTGAGAGGCTAGAGAAGGAGGGTTTCACTATCCCTACTGACGTTCAGTCTGTGGCAGTTCCTACCATTCTGAACAACTGTGATGTGATAATTCAGTCGTACACTGGCTCGGGGAAGACATTGGCTTATCTACTTCCTATACTCTCAGTTGTTGGGCCTCTGAGGGGCAAGGTTCTCGAAGAAGGTGGCAGCGAGAGTGGGAAGAATTTGGGGATTGAAGCAGTGATTGTTGCTCCTTCTAGGGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGGTGCTTGGAATGGACAACAAGAAAGCAGTTCAGCAGCTTGTGGGAGGGGCCAACCGAACCAGGCAAGAGGAAGCACTCAAGAAAAACAAACCTGTCATTGTTGTTGGCACTCCGGGTAGGATAGCGGAGCTAAGTGCATCCGGGAAGCTTCGCACTCATGGCTGTCGGTATTTGGTGTTAGATGAAGTTGATGAGCTCTTGTCGTTCAATTTCCGGGAAGATATGCACCGGATATTGGAGCATGTAGGGAGGAGATCGGGTGTGGAAGTGGACCCGAATTCGGATTCTAGGAAGGCCGAGCGTCAGTTAATTATGGTTTCTGCAACTGTGCCGTTTTCTGTTATAAGGGCAGCTAGGAGGTGGGGCTGTGATCCACTTCTTGTCCAAGCTAAGAAGGTTTCCCCGCTTGAAGCCGTCTCTCCCTCTGAGCCTGTCACATTGTCGCGGTCTTCGCCTAGCTCGACTATGCCATCTCCGGCAGCAGTAGAGAGTCTACCCCCTGCATTGAAACACTACTACTTTGTAACAAGGCTGCAGCACAAAGTTGATGTGTTGAGAAGATGCATTCATGCACTTGATGCCAAATTTGTGATAGCTTTCATGAACCATACTAAGCAGCTAAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGTATGACAGCCATGGAGTTACATGGGGACCTTGGGAAGCTTGCAAGGTCAACCACTCTGAAGAAGTTCAAGAATGGTGAGGTGAGAGTTTTGGTGACAAATGAGTTATCAGCAAGGGGTTTGGACGTGGCAGAATGTGATCTTGTGGTTAACCTAGACTTACCGACAGATTCAATTCACTATGCACACCGAGCTGGGCGAACCGGCCGCCTTGGTAGGAATGGTACAGTGGTAACCATATGCGAAGAGTCAGAGGTGTTTGTTGTGAAGAAATTGCAGAAGCAGCTTGCAATACCAATTACATCCTGTGATTTTGCAGAGGGGAAGCTACTTGTCACTACTGAAGAAGAGAAAACAGTAAGCACTTCTCAAAGATGA 1587 0.4745 MRRALATSSRNVLLHASSVKPKHGSLTLSSIGFQTETEPLGSPSENLKSKGKPFDINEDKKKKKTFQVLEKQQIESAPFAANSFSELGLPHRLIERLEKEGFTIPTDVQSVAVPTILNNCDVIIQSYTGSGKTLAYLLPILSVVGPLRGKVLEEGGSESGKNLGIEAVIVAPSRELGMQIVREFEKVLGMDNKKAVQQLVGGANRTRQEEALKKNKPVIVVGTPGRIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSGVEVDPNSDSRKAERQLIMVSATVPFSVIRAARRWGCDPLLVQAKKVSPLEAVSPSEPVTLSRSSPSSTMPSPAAVESLPPALKHYYFVTRLQHKVDVLRRCIHALDAKFVIAFMNHTKQLKDVVFKLEARGMTAMELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVVTICEESEVFVVKKLQKQLAIPITSCDFAEGKLLVTTEEEKTVSTSQR 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0026 528 Pfam DEAD/DEAH box helicase 106 300 IPR011545 GO:0003676|GO:0005524
Aed6g0026 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 495 IPR027417 -
Aed6g0026 528 Gene3D - 48 316 IPR027417 -
Aed6g0026 528 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 82 110 IPR014014 GO:0003724
Aed6g0026 528 SMART ultradead3 101 325 IPR014001 -
Aed6g0026 528 SMART helicmild6 394 475 IPR001650 -
Aed6g0026 528 MobiDBLite consensus disorder prediction 327 346 - -
Aed6g0026 528 MobiDBLite consensus disorder prediction 35 56 - -
Aed6g0026 528 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 314 IPR014001 -
Aed6g0026 528 MobiDBLite consensus disorder prediction 325 347 - -
Aed6g0026 528 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 14 508 - -
Aed6g0026 528 CDD DEADc 93 315 - -
Aed6g0026 528 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 14 508 - -
Aed6g0026 528 CDD SF2_C_DEAD 355 484 - -
Aed6g0026 528 Gene3D - 352 516 IPR027417 -
Aed6g0026 528 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 514 IPR001650 -
Aed6g0026 528 Pfam Helicase conserved C-terminal domain 372 475 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0026 Aed-Chr6 410812 412398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0026 83 503 Eukaryotic Initiation Factors Gene Family AT3G19760 24.882 9.39e-43 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0026 - - gmx:100812968 870.922