Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0013 ATGGCTGGAGTGAGGGAACAGGACCAGTACATGCCGATAGCGAATGTGATAAGAATCATGCGGAGGATTCTGCCGGCGCACGCGAAGATCTCGGACGACGCGAAGGAGACGATTCAGGAGTGCGTGTCGGAGTACATCAGTTTCATCACGTCGGAGGCGAACGAGAAGTGCCAGGGTGAGCAGCGGAAGACGGTGACCGCGGAGGATGTGCTGTGGGCAATGGAGAAGCTTGGCTTCGACAACTACCTTCCATCACTGCATCGTTACATTCACCGCTACCGCGATAGCGAAGGAGAACCTGCTTCTGTCAGACGCGCTTCTGCATGTGTTTCTTCGATGGGGATAATGCATCCACGCCCACTTGCACCCCAACACCACCGCTCACTTGCACCGCCGCCCCCGCCGCCGCTCCCAGCTTATAGTCCGTTTGGAGGAGTGTTTGACTTTGACCCAACATCGCAAGGGTTTTACAGGGATGAACATCATGCATCAGCTTCTGGCTCTGGTGGTGGTTATGTTGCAGCCACCTTTGATCCTTATGCTAACAACATCAATCGTCAGTGA 564 0.5479 MAGVREQDQYMPIANVIRIMRRILPAHAKISDDAKETIQECVSEYISFITSEANEKCQGEQRKTVTAEDVLWAMEKLGFDNYLPSLHRYIHRYRDSEGEPASVRRASACVSSMGIMHPRPLAPQHHRSLAPPPPPPLPAYSPFGGVFDFDPTSQGFYRDEHHASASGSGGGYVAATFDPYANNINRQ 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0013 187 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Aed6g0013 187 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Aed6g0013 187 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Aed6g0013 187 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Aed6g0013 187 SUPERFAMILY Histone-fold 7 102 IPR009072 GO:0046982
Aed6g0013 187 Gene3D Histone, subunit A 2 113 IPR009072 GO:0046982
Aed6g0013 187 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 125 - -
Aed6g0013 187 ProSitePatterns NF-YB/HAP3 subunit signature. 41 57 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aed6g0013 187 MobiDBLite consensus disorder prediction 120 143 - -
Aed6g0013 187 MobiDBLite consensus disorder prediction 125 141 - -
Aed6g0013 187 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 125 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0013 Aed-Chr6 186203 186766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0013 4 120 CCAAT-HAP3 Transcription Factor Family AT5G47670 70.940 6.62e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aed6g0013 CBFD_NFYB_HMF 5.9e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0013 K08065 - gmx:100811633 236.113