Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2675 ATGAACGGGAAAGCCTCCGTCTCTAAGGAGCTCAATGCCAAGCACGCCAAGATATTAGAAGGAATTCTTAAGCTGCCTGAGAACAGGGAATGTGCAGACTGCCGGAACAAGGCACCACGATGGGCAAGTGTGAACCTTGGGATTTTCATTTGCATGCAATGTTCAGGAATTCACCGAAGTCTTGGAGTTCATATATCAAAGGTCTAA 207 0.4638 MNGKASVSKELNAKHAKILEGILKLPENRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKV 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2675 68 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 68 - -
Aed5g2675 68 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Aed5g2675 68 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Aed5g2675 68 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 68 IPR044520 GO:0005096
Aed5g2675 68 SUPERFAMILY ArfGap/RecO-like zinc finger 15 68 IPR037278 -
Aed5g2675 68 SMART arf_gap_3 16 68 IPR001164 GO:0005096
Aed5g2675 68 Gene3D Arf GTPase activating protein 2 68 IPR038508 -
Aed5g2675 68 Pfam Putative GTPase activating protein for Arf 17 68 IPR001164 GO:0005096
Aed5g2675 68 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 68 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2675 Aed-Chr5 27252811 27253662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2675 19 68 C2H2 Transcription Factor Family AT3G07940 64.000 8.11e-20 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2675 K12486 - gmx:100803735 141.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2675 5 27252811 27253662 Aed5g2675 5 27252811 27253662 ECH