Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2669 ATGGAGTACGGTGGGTCGCAGTCACCAGGGGAGCAGGATGGTTCGGATTCCCAAGAGAAGAGAAAGCGCTATCATCGTCATACTACCAATCAGATTCAGAGGCTTGAGTCAATGTTCAAAGAATGCCCCCATCCAGATGAGAAACAAAGGTTGCAATTAAGCAGGGAATTAGGCCTTGCCCCGAGGCAGATCAAGTTCTGGTTCCAAAACAGAAGGACCCAAATGAAGGCCCAACACGAAAGAGCTGACAATTGTGGTCTTCGAGCTGACAATGACAAGATACGTTGCGAGAACATAGCCATCAGGGAGGCCTTGAAAAATGTTATCTGTCCTTCTTGTGGTGTCCCTCCTCTCAACCACGATTCTTATTTTGATGACCAAAAGTTGCGATTGGAGAACGCCCAACTCAAACAAGAGCTTGATAGAGTATCTAGCATTGCTGCTAAGTACATTGGAAGACCAATTTCCCAGCTCCCCTCGGTTCAACCTATTCATATATCGTCTCTGGCGAGTTTTGGAAACCAAGGGACCATCCCAAATTTTCCTTCCCTTTCAGACATGGACAAGTCCCTCATGTCAGACATTGCTTCTAATGCCATGGAAGAATTACTCAGGCTCATCCAGACAAACGAACCCTTGTGGCTCAAATCAAACGTCGATGGGAGAGATGCTCTTTGTTGTGATGCCTATGAAAGAATGTTCCCCAACCCCATTACCCGGCCCCCCAAGAATCCTAATGTTCGCATTGAAGCATCCCGAGATTCTAAACTTGTATTAATCAATACTTTAACTTTGACTGACATGTTTATGGACCCAAACAAGTGGATACAACTTTTTCCCACTATTGTCTCAGTGGCAAGGACTATTCAAGTCATATCTTCTGGCCGGATCATGGGCAGTTGCAGTGGTTCTTTACAATTGATTTCCCTCAAGGGCCAAGGCATCTTTTTTCAGATGTATCAAGAGTTGCAAGTGCTTTCCCCACTTGTTTCAACTCGAGAGTTTTACTTCCTGCGTTACTGTCAGCAAATTGAGCAAGGCACATGGGCAGTAGTGGACGTTTCTTATGATTTTCCCCAAGATACTCAATTTCGGTCTCATCGTCGTCCTTCCGGTTGCTTGATCCAGGACATGCCTGATGGGCATTCCAAGATTACTTGGGTTGAACACGTAGAGATTGAAGATAAAACTCTTCCTCATCGGCTTTATAGAAATCTTATTTATAGTGGGATGGCATTTGGAGCTGAAAGATGGCTTGCTAACCTCCAGAGGATGTGCGAAAGACTTACTTATATGATGGTTACAAGCAATCCTACCCTTAGAGAAGTAATTTCATCTCCTGAGGGCAAGAAGAGCATGATGAAACTTGCTCAAAGGATGGTCAGCAATTTCTGCGGCAGCATTAGCACATCAAGTGGCCATCAATGGACCACACTCTCTGGGTTGAATGAAATCGTAGTAAGAGTCAGTGTCCATGAAAGCTCAGATCCTGGACAACCTAATGGTGTGGTGCTAAGTGCAGCCACTACCATTTGGCTCCCCACCCCTCCACACATCGTCTTTAATTTCTTCAAGGATGAAAGCAAAAGACCTCAGTGGGATGTTCTTTCCAGCGGTAATGACGTGCAAGAGGTTGCCAACATAGCAAATGGTTCGCACCCTGGTAACACTATATCAGTTCTTCGAGGTTTGAACAGCAGTCAGAACATGTTAATACTCCAAGAGAGTTGCATAGATTCCTCTGGTTCACTTGTGGTTTATTGCCCAGTTGATATGCCATCCATTAATATAGCAATGAGTGGTGAAGACCCTTCACACATTCCCTTGCTACCAAATGGATTTACCATATTGCCTGATGGACAGCCAGAACAGGAAGGAGATGGAGCATCAACCTCAACTGGATCCGGGTCCAGAGGTTCACTAATTACAATTGCATTCCAGATTCTAGTGAGCAGCTTGCCATCTGCTAAGCTCAATATGGAGTCGGTCACAACTGTTAACAATCTTATTGGATCCACTATCCACCAAATTAAGTCTTCCTTTACTTCTACCTAG 2055 0.4477 MEYGGSQSPGEQDGSDSQEKRKRYHRHTTNQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCGLRADNDKIRCENIAIREALKNVICPSCGVPPLNHDSYFDDQKLRLENAQLKQELDRVSSIAAKYIGRPISQLPSVQPIHISSLASFGNQGTIPNFPSLSDMDKSLMSDIASNAMEELLRLIQTNEPLWLKSNVDGRDALCCDAYERMFPNPITRPPKNPNVRIEASRDSKLVLINTLTLTDMFMDPNKWIQLFPTIVSVARTIQVISSGRIMGSCSGSLQLISLKGQGIFFQMYQELQVLSPLVSTREFYFLRYCQQIEQGTWAVVDVSYDFPQDTQFRSHRRPSGCLIQDMPDGHSKITWVEHVEIEDKTLPHRLYRNLIYSGMAFGAERWLANLQRMCERLTYMMVTSNPTLREVISSPEGKKSMMKLAQRMVSNFCGSISTSSGHQWTTLSGLNEIVVRVSVHESSDPGQPNGVVLSAATTIWLPTPPHIVFNFFKDESKRPQWDVLSSGNDVQEVANIANGSHPGNTISVLRGLNSSQNMLILQESCIDSSGSLVVYCPVDMPSINIAMSGEDPSHIPLLPNGFTILPDGQPEQEGDGASTSTGSGSRGSLITIAFQILVSSLPSAKLNMESVTTVNNLIGSTIHQIKSSFTST 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2669 684 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 10 680 IPR042160 -
Aed5g2669 684 SUPERFAMILY Bet v1-like 186 429 - -
Aed5g2669 684 Pfam START domain 195 428 IPR002913 GO:0008289
Aed5g2669 684 SUPERFAMILY Homeodomain-like 6 78 IPR009057 -
Aed5g2669 684 ProSiteProfiles START domain profile. 185 431 IPR002913 GO:0008289
Aed5g2669 684 MobiDBLite consensus disorder prediction 617 636 - -
Aed5g2669 684 SMART HOX_1 19 82 IPR001356 GO:0003677
Aed5g2669 684 Pfam Homeodomain 21 76 IPR001356 GO:0003677
Aed5g2669 684 SMART START_1 194 428 IPR002913 GO:0008289
Aed5g2669 684 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981|GO:0006355
Aed5g2669 684 Gene3D - 241 431 IPR023393 -
Aed5g2669 684 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG12-RELATED 10 680 - -
Aed5g2669 684 CDD START_ArGLABRA2_like 189 427 - -
Aed5g2669 684 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677
Aed5g2669 684 CDD homeodomain 21 79 IPR001356 GO:0003677
Aed5g2669 684 Gene3D - 7 88 - -
Aed5g2669 684 MobiDBLite consensus disorder prediction 1 29 - -
Aed5g2669 684 SUPERFAMILY Bet v1-like 446 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2669 Aed-Chr5 27207827 27210588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2669 16 682 Homeobox Transcription Factor Family AT1G73360 59.149 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed5g2669 START 8.1e-41 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2669 K09338 - gmx:100796808 1140.56