Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2668 ATGTTAGTGAATAACTCATCTCCGTCGACGTCAGTTGAGCCGACTAATAGAAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCCGAAGTGGTGTCCCTCTCACCCAAGACCTTGCTGGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTTCAGATGCACCGGCGGCGACACAAAGTGCCGTGGAAGCTATTGAAGAGGGAAACAGCTCTGGTGAAGAAGCGAGTGTTTGTTTGCCCGGAGCCTAGCTGTTTGCACCATGACCCGTGTCATGCTCTGGGTGATCTTGTTGGCATAAAGAAGCATTTCAGAAGGAAACACAGCAATCACAAGCAATGGGTCTGCGAGAGATGCTCCAAAGGGATAGCGATGGCGGAGAAAGCGCTAGCGGAAGAGGCAAGGAAGCAAGCAAAGAGGCAGATCGAACTGGCTGAACTTGAGTTCACTAACGCCAAGAGGATCAGACAACAAGCCCTTGCGGAACTCCACAAAGCCTATGCCTTGAAGGACCATGCAATCAAACAGATCAATTCAACCATGCTTCAAATCACTTGCCGAGCTTGCAAGCACCATTTTCATTCCACCTACTTAACGACAACTACAACAACACAACCTCAACCTTCACCCCATCGTCTCAATCCCATTAATTAG 681 0.4949 MLVNNSSPSTSVEPTNRRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETALVKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGIAMAEKALAEEARKQAKRQIELAELEFTNAKRIRQQALAELHKAYALKDHAIKQINSTMLQITCRACKHHFHSTYLTTTTTTQPQPSPHRLNPIN 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2668 226 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 68 IPR013087 -
Aed5g2668 226 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 6 133 - -
Aed5g2668 226 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 132 213 - -
Aed5g2668 226 SMART c2h2final6 87 117 IPR013087 -
Aed5g2668 226 SMART c2h2final6 46 68 IPR013087 -
Aed5g2668 226 MobiDBLite consensus disorder prediction 1 32 - -
Aed5g2668 226 Coils Coil 137 171 - -
Aed5g2668 226 Gene3D Classic Zinc Finger 23 89 - -
Aed5g2668 226 PANTHER OS03G0310200 PROTEIN 6 133 IPR039288 GO:0009630
Aed5g2668 226 PANTHER OS03G0310200 PROTEIN 132 213 IPR039288 GO:0009630
Aed5g2668 226 SUPERFAMILY beta-beta-alpha zinc fingers 43 69 IPR036236 -
Aed5g2668 226 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2668 Aed-Chr5 27197689 27199076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2668 132 211 C2H2 Transcription Factor Family AT2G01940 53.750 3.02e-21 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed5g2668 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2668 K25871 - gmx:100798167 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2668 5 27197689 27199076 Aed5g2668 5 27197689 27199076 ECH
Aed5g2668 5 27197689 27199076 Aed7g0328 7 2378941 2382615 PCT