Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2662 ATGAGCTCGCAAGAGCGAAGCCAGCAGCGGTCGAGGGTTCCTCGTCAGGAATGGATTCGCAGAGGATCCACCAATCAGAACCAGAATGGGAATGGTGATGTTGCTGGTTGCTCCAATCCAACAAGTCGCCAAAGGCCCAAGAATAATAATAGTAATAATGATGTGCACAAGGTGGCATCATTGAATTCGAGGGACTCTAATCTGCCTCAGCTGCTGCAAGAGATTCAGGACAAGCTCGTGAAAGGTGCTGTGGAATGCATGATTTGCTATGACATGGTGCGAAGGTCCGCGCCTATCTGGTCCTGCTCCAGTTGCTACTCTATCTTCCACCTGAATTGTATAAAGAAGTGGGCACGTGCACCCACTTCTGTGGATTTATCCGTTGAGAAAAACCAAGGGGGTTTCAATTGGCGCTGCCCTGGTTGCCAGTCTGTGCAGCTCACATCATCCAAGGAAATTAGGTATGCATGTTTCTGTGGAAAGAGGCCAGACCCACCCTCCGATTTGTATCTCATGCCGCATTCCTGTGGTGAATCATGTGGCAAGCCTCTTGAGCGCGACCTTCGTGGGGATATTAAGGACCTTCTTTGCCCTCATCTTTGTGTCTTGCAATGCCATCCCGGTCCCTGCCCTCCTTGCAAAGCATTTGCCCCTCCATGTTTGTGTCCTTGTGGCAAGAAAAATATTACCACTCGTTGCTCTCTCCGCCACTCTGTTCTTACCTGTGGCCAGCGCTGTGACAAGCTTCTTCAATGTGGCCGTCATCGCTGTGACCAAATCTGTCATCTGGGTCCTTGTCATCCTTGCCAGGTTCCAATCAACGCCTCTTGCTTTTGTACTAAAAAGATGGAGCCAATTCTTTGTGGGGAGATGGCTGTGAAGGGTGAAATCAGAGCAGAAGGTGGACTTTTTTCTTGTGGTTCCACTTGTCGAAAGACACTTAATTGCGGTAATCATATCTGTCTTGAGACTTGTCATCCAGGCACCTGTGGGGAGTGTGAATTATTACCTTCCCGTATTAAGTCATGCTGTTGTGGGAAAACTGGGTTGGAGGAGGAACGACATAGTTGTTTAGATCCAATACCTACCTGTTCACAAGTATGTGGCAAGTCCCTCCCTTGCGGGCTTCATCACTGTGAAGAGGCATGCCATGTTGGGGATTGTTCTCCTTGTCTGGTTCTAGTTTCCCAGAAGTGTCGATGTGGCTTGACTTCCCGATCTGTGGAGTGCTGCAAGACAACAATGGAAAATGACAAGTTTACTTGTGAAAAGCCTTGTGGGCAGAAAAAGAATTGTGGAAGGCATCGATGTAGTGAAAGGTGTTGTCCACTTTCTAATCCAAACAATATTCTAAATGCAGATTGGGATCCACACTTCTGTTCATTGCCATGTGGAAAGAAGTTAAGGTGTGGGCAGCATGCATGTGAATCCCTGTGCCACAGTGGTCATTGTCCACCTTGTTTTGAAACTATATTTACTGATTTGACATGTGCTTGTGGCAAGACTTCAATCCCTCCTCCATTGCCTTGTGGCACACCGCCTCCCTCATGTCAGCTTCCATGTTCAGTTCCTCAGCCTTGTTTGCATCCAGCCTCTCACAGCTGCCATTTTGGAGATTGCCCTCCTTGTTCAGTGCCTGTAGCAAAAGAATGCATTGGTGGGCATGTAGTTCTTAGGAACATACCTTGTGGTTCAAAGGATATTAGATGCAATAAACTCTGTGGGAAGACCAGACAGTGCGGTTTACATGCATGTGGCAGAACATGTCACCTCCCACCTTGTGATAATCCATCTGCTGTGCCAGGTATCCGAGCCTCTTGTGGGCAAACATGTGGTGCTCCTAGGAGAGACTGCCGCCATACATGTACAGCTCCTTGTCACCCTTCAACTCCATGTCCGGATACAATATGTGACTTCCCTGTCACAATTACTTGTTCTTGTGGACGGATAACAGCAAATGTTCCTTGTGATGCTGGTGGAAGCTGTGCTAATTATAATGCTGATGCTGTCCACGAAGCTTCCATCATTCAAAAGTTGCCTGTGCTGCTTCAACCCATGGCTGCAAATGGCAAAAAAGTTCCCCTTGGACAAAGAAAACTGTTGTGTAATGATGACTGTGCTAAGCTAGAGCGTAAACGGGTTCTTGCAGACGCTTTTGAGATTACCACCCCAAATCTGGATTCTCTCCATTTTGGTGAGAATTCGGTTGCTTCTGAATTGCTTGCTGACATGTTGAGACGTGATCCTAAATGGGTTTTATCTGTTGAGGAGAGATGCAAGTTTTTAGTACTTGGCAAGAGCAGAGGAAATGCACATGGTCCAAAAGTCCATGTTTTCTGTCCTATGTTAAAGGACAAAGGAGATGCAGTGAGGGTGATTGCTGAGAGATGGAAGCTTGCAGTGAATGCAGCTGGTCGGGAGCCCAAGCGTTTCGTAGTTGTTCATGTTACCCCAAAATCAAGAGCTCCTGCTCGTGTGCTAGGGGTTAAGGGTACTCCAACCATAAATGCGCCCCTTCCTCCGGCATTTGATCCTTTAGTTGATATGGATCCTCGACTTGTTGTCTCTTTTCTAGACTTACCAAGGGATGCAGATATTAGTGCATTGGTGTTGAGATTTGGTGGTGAGTGTGAGCTTGTTTGGTTAAATGACAAAAATGCATTGGCTGTTTTTAATGACCCTGCCCGTGCTGCAACTGCAATGAGGAGGCTGGATCATGGTACTGTTTATCAGGGAGCTGTGGTGGTGGTTGTTCCAAATGTTGGGGCATCAGTAGCATCTTCAGCTACCAATGCCTGGGGAGGATCTGGGACAATGAAAGGAGGAGCACTGGCAGCATTAAAGGGTAATCCATGGAAAAAGGATGTTATTCAAGAGTCAAGTTGGAGAGAAGAGGCTTGGGGTGATGAGGAGTGGGCTACTGGTTCTGCTAATTTCCAATTGCCTATTCAGAAGAAAGAAGCCCTAATATCTGCTTCGGTAAATCCTTGGAGTGCCTTAAATCAAGAATCATCTTCAAGTTCATCTGTTCCAGCTTTTAAAATTGACGGTTCTAGGAAACACTCTGAAAGTAGTGCTGTCACAGAGTTGGAGCCTCGTGATGGTGGTTCAAATCTAGGAGGGCAGCCTGCAGGAAACTTTGATGGTTTAGAAGCTTCTGATGTAGTAGATGATTGGGAGAAGGCTTGTGAATAG 3195 0.4685 MSSQERSQQRSRVPRQEWIRRGSTNQNQNGNGDVAGCSNPTSRQRPKNNNSNNDVHKVASLNSRDSNLPQLLQEIQDKLVKGAVECMICYDMVRRSAPIWSCSSCYSIFHLNCIKKWARAPTSVDLSVEKNQGGFNWRCPGCQSVQLTSSKEIRYACFCGKRPDPPSDLYLMPHSCGESCGKPLERDLRGDIKDLLCPHLCVLQCHPGPCPPCKAFAPPCLCPCGKKNITTRCSLRHSVLTCGQRCDKLLQCGRHRCDQICHLGPCHPCQVPINASCFCTKKMEPILCGEMAVKGEIRAEGGLFSCGSTCRKTLNCGNHICLETCHPGTCGECELLPSRIKSCCCGKTGLEEERHSCLDPIPTCSQVCGKSLPCGLHHCEEACHVGDCSPCLVLVSQKCRCGLTSRSVECCKTTMENDKFTCEKPCGQKKNCGRHRCSERCCPLSNPNNILNADWDPHFCSLPCGKKLRCGQHACESLCHSGHCPPCFETIFTDLTCACGKTSIPPPLPCGTPPPSCQLPCSVPQPCLHPASHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHLPPCDNPSAVPGIRASCGQTCGAPRRDCRHTCTAPCHPSTPCPDTICDFPVTITCSCGRITANVPCDAGGSCANYNADAVHEASIIQKLPVLLQPMAANGKKVPLGQRKLLCNDDCAKLERKRVLADAFEITTPNLDSLHFGENSVASELLADMLRRDPKWVLSVEERCKFLVLGKSRGNAHGPKVHVFCPMLKDKGDAVRVIAERWKLAVNAAGREPKRFVVVHVTPKSRAPARVLGVKGTPTINAPLPPAFDPLVDMDPRLVVSFLDLPRDADISALVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGTVYQGAVVVVVPNVGASVASSATNAWGGSGTMKGGALAALKGNPWKKDVIQESSWREEAWGDEEWATGSANFQLPIQKKEALISASVNPWSALNQESSSSSSVPAFKIDGSRKHSESSAVTELEPRDGGSNLGGQPAGNFDGLEASDVVDDWEKACE 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2662 1064 CDD NF-X1-zinc-finger 460 503 - -
Aed5g2662 1064 ProSitePatterns Zinc finger PHD-type signature. 86 142 IPR019786 -
Aed5g2662 1064 CDD NF-X1-zinc-finger 364 412 - -
Aed5g2662 1064 SMART znfxneu3 252 271 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 SMART znfxneu3 432 462 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 SMART znfxneu3 197 215 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 SMART znfxneu3 618 639 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 SMART znfxneu3 316 335 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 SMART znfxneu3 580 609 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 SMART znfxneu3 374 393 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 SMART znfxneu3 527 545 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 SMART znfxneu3 470 489 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 CDD NF-X1-zinc-finger 517 565 - -
Aed5g2662 1064 MobiDBLite consensus disorder prediction 1000 1064 - -
Aed5g2662 1064 ProSiteProfiles Zinc finger RING-type profile. 86 143 IPR001841 -
Aed5g2662 1064 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 3 1061 - -
Aed5g2662 1064 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 3 1061 IPR034078 GO:0003700
Aed5g2662 1064 CDD NF-X1-zinc-finger 306 348 - -
Aed5g2662 1064 CDD NF-X1-zinc-finger 607 656 - -
Aed5g2662 1064 ProSiteProfiles Zinc finger PHD-type profile. 83 145 IPR019787 -
Aed5g2662 1064 MobiDBLite consensus disorder prediction 1 56 - -
Aed5g2662 1064 SUPERFAMILY RING/U-box 85 146 - -
Aed5g2662 1064 Pfam NF-X1 type zinc finger 199 214 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 Pfam NF-X1 type zinc finger 374 391 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 Pfam NF-X1 type zinc finger 535 544 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 Pfam NF-X1 type zinc finger 611 637 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 Pfam NF-X1 type zinc finger 470 487 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 Pfam NF-X1 type zinc finger 316 333 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 Pfam NF-X1 type zinc finger 432 443 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 Pfam NF-X1 type zinc finger 252 270 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 Pfam NF-X1 type zinc finger 580 595 IPR000967 GO:0005634|GO:0008270
Aed5g2662 1064 MobiDBLite consensus disorder prediction 18 56 - -
Aed5g2662 1064 CDD NF-X1-zinc-finger 242 290 - -
Aed5g2662 1064 CDD RING-CH-C4HC3_NFX1 85 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2662 Aed-Chr5 27166146 27169340 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Aed5g2662 zf-NF-X1 1e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2662 K12236 - gmx:106799700 1992.24