Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2661 ATGAGCACACAGCCTGGACCTCCAACTCACCGGACTAGCCCCTGCAACTGGGCCGGTGTCCAATGCGAGAAGGACCATGTGGTGGAGCTTCACCTCCCCGGTGTGGCCCTCTCCGGCGAAATCCCCGTTGGAATATTCAGAAATCTTAGCCAGCTCCGCACCCTGAGTCTCCGCTTCAACGCTCTTAGGGGTTCCCTACCTTCAGATCTGGCCTCATGTCTCAACCTCCGCAACCTCTACATCCAGCGCAACTTGCTCAGCGGCCAAATCCCAGACTTTTTGTTTGATTTGCCTGACTTGGTTCGCTTGAATATGGGCTTCAACAACTTCTCTGGCCCATTTCCCAGCGCCTTCAACAACCTAACCCGCTTGAAAACTTTGTTTCTCGAAAACAACCACCTCTCCGGCCCAATCCCCGACTTCAACAAACTCACCCTCGACCAGTTCAACGTCTCCAACAACTTCCTCAATGGCTCTGTCCCTCTTCTTCTTCACACTTTCCCCCAGGACTCTTTTCTAGGCAACTCTCTCTGTGGCCGTCCTCTCTCTCCCTGTCCCGGAGATGTCGCCGATCCTCTCTCCGTCGACAATACCTCAAAGGACAACCACAAGAAGAGCAAGTTATCTGGTGGTGCCATAGCGGGAATTGTTATCGGATCGGTGGTGTGTCTTCTTTTGCTTGTGTTCCTCTTGATTTTCCTCTGCAGGAACAAGAGTGCCAAGCAGACCAGCGCTGTCGACATTGCTACTGTCAAACATCCTGAGACGGACTCCGAGGTTCTTGCTGACAAGGGGGTCTCCGATGTCGAGAACGGTGGCCATGCCAATGGGAGCTCTGCGGTCGCCGTGGCTGTGGCGGCGGCGGCGGCGAATGGTGGTGGTAGCAAGGCGGAAGGGAACGCCAAGAAGTTGGTGTTTTTTGGGAATGCGGCGAGAGCGTTTGATTTGGAGGATCTGCTTAGGGCTTCAGCTGAGGTTTTGGGGAAAGGGACTTTCGGGACGGCGTACAAGGCGGTGTTGGAGTCAGGGCCGGTGGTGGCGGTGAAGAGGTTGAAGGATGTGACGATTTCAGAGAAGGAGTTTAAGGAGAAGATTGAGACGGTGGGAGCGATGGATCACGAGAGCTTGGTCCCTCTCAGGGCTTACTATTTCAGCAGGGATGAGAAGCTCCTTGTCTATGATTACATGCCCATGGGAAGCTTGTCTGCGCTTTTGCATGACATAGACCTCCTCATTGGAGCAGTGGTTATGATGTTTCAGGAAACAAAGGGGCGGAAGGCGGATGTGTACAGTTTTGGTGTATTGCTCTTGGAACTTCTGACTGGGAAGGCACCTACCCATGCTCTCCTGAATGAGGAAGGAGTGGACCTTCCCAGGTGGGTTCAATCCGTGGTAAGAGAAGAGTGGACTTCTGAGGTCTTTGATCTTGAACTCCTTAGGTATCAGAATGTGGAAGAGGAGATGGTTCAATTGTTGCAACTTGCAGTTGATTGTGCTGCACAATACCCTGACAAGCGCCCTTCAATGTCTGAAGTGGTAAAGAGCATACAAGAGTTGCGAAGGTCTAGCTTGAAAGAGGAGCAGGAGCTGGAGCAGGACCAAATCCAACATAATGCCCACGTCACCAAGATAATCAAATATCCTTACTGTATGAAATCAAATGTTAGAAAAGGGTACGGGGCTACACTACAGCTTACAAAAGGTTGGAAAGTGATACTTATGAGAGAAACAAAGATTGGGCACCATGTTATTGTTACGTCTCTAGGTTATGCCGTCCCGTCCCGTCCCATCTTCTGTAAAAATTGA 1806 0.5138 MSTQPGPPTHRTSPCNWAGVQCEKDHVVELHLPGVALSGEIPVGIFRNLSQLRTLSLRFNALRGSLPSDLASCLNLRNLYIQRNLLSGQIPDFLFDLPDLVRLNMGFNNFSGPFPSAFNNLTRLKTLFLENNHLSGPIPDFNKLTLDQFNVSNNFLNGSVPLLLHTFPQDSFLGNSLCGRPLSPCPGDVADPLSVDNTSKDNHKKSKLSGGAIAGIVIGSVVCLLLLVFLLIFLCRNKSAKQTSAVDIATVKHPETDSEVLADKGVSDVENGGHANGSSAVAVAVAAAAANGGGSKAEGNAKKLVFFGNAARAFDLEDLLRASAEVLGKGTFGTAYKAVLESGPVVAVKRLKDVTISEKEFKEKIETVGAMDHESLVPLRAYYFSRDEKLLVYDYMPMGSLSALLHDIDLLIGAVVMMFQETKGRKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSEVVKSIQELRRSSLKEEQELEQDQIQHNAHVTKIIKYPYCMKSNVRKGYGATLQLTKGWKVILMRETKIGHHVIVTSLGYAVPSRPIFCKN 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2661 601 SUPERFAMILY Protein kinase-like (PK-like) 325 524 IPR011009 -
Aed5g2661 601 Coils Coil 516 536 - -
Aed5g2661 601 Gene3D Ribonuclease Inhibitor 7 97 IPR032675 -
Aed5g2661 601 Gene3D Transferase(Phosphotransferase) domain 1 396 545 - -
Aed5g2661 601 SUPERFAMILY L domain-like 11 165 - -
Aed5g2661 601 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 425 542 - -
Aed5g2661 601 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 11 407 - -
Aed5g2661 601 PANTHER OS05G0588300 PROTEIN 11 407 - -
Aed5g2661 601 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Aed5g2661 601 ProSiteProfiles Leucine-rich repeat profile. 123 145 IPR001611 GO:0005515
Aed5g2661 601 ProSiteProfiles Protein kinase domain profile. 321 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2661 601 Gene3D Ribonuclease Inhibitor 101 185 IPR032675 -
Aed5g2661 601 PANTHER OS05G0588300 PROTEIN 425 542 - -
Aed5g2661 601 Pfam Leucine rich repeat 75 134 IPR001611 GO:0005515
Aed5g2661 601 Pfam Protein tyrosine and serine/threonine kinase 420 515 IPR001245 GO:0004672|GO:0006468
Aed5g2661 601 Gene3D Phosphorylase Kinase; domain 1 289 395 - -
Aed5g2661 601 Pfam Protein kinase domain 324 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2661 Aed-Chr5 27155290 27158412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2661 425 520 Receptor kinase-like Gene Family AT1G48480 60.825 9.97e-34 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Aed5g2661 PK_Tyr_Ser-Thr 1.6e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2661 - - gmx:100818955 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0294 7 2118961 2121459 Aed5g2661 5 27155290 27158412 ECH
Aed5g2661 5 27155290 27158412 Aed5g2661 5 27155290 27158412 ECH
Aed5g2661 5 27155290 27158412 Aed7g0294 7 2118961 2121459 PCT