Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2647 ATGTGGATGGTTGGTTACAATGAAGGTGGAGAGTTCAACAATATGGCTGATTATGCATTCAATGGAAGGAAACTCAGACCTCTCATGCCAAGGCCACTCACTTCTCCTAATAACACCTCCAACACAGCCTCTCCTTGCTTGACCCGCATTCATCATGCCAACGATTTCTTTTCACAATATCACAATCTGGTGGGAGATCAGGGAAAGAGAGAGTTCAACCCTCCACCGGTTGTGGTTAGTTCAAGGTGGAATCCAACCCCGGAGCAACTAAGAGCATTGGAGGAATTGTATAGAAGAGGGACAAGAACACCATCTGCGGAGCAAATCCAACAAATCACGGCACAGCTTAGAAGGTTTGGAAAAATTGAAGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCTAGAGAAAGACAGAAACGCCGCCGTCAAATGGAGTCAGCTGCTACTGAGGCCCGTGACTTTGATACTACTCTTGTTGAAAAGAAAGACTCTTTCTTAGGCGCAAGTAGGTCAGTGTTTGAAGTTGAACAGACCAAGAACTGGCCACCCTCTACAAACTGCAGTACTCTTGCAGAGGAATCTGTTTCAATACAAAGGGCAGCAAAAGCAGCGATTGCAGAGTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAGTTACAACATAGAAGAAACTTTATGGAGAGGAATGCCACGTGGCAAATGATGCAGCTATCTTGTCCTTCCCCTCCTACAGTTTCACCCCACCTCATAAACACACCTCCTCTTACCTCTACTACTAGCATGGCCACCACAGTAACAGCAAGAGTAATGGACCCTAAGCTCATTAAGACTCATGATCTCAGCTTCTTTATTTCACCTAACAGAACCAGTATCAACACCCAGGATGATAATTGTGGGGAATCTCATGATCAAACCCTTCAACTTTTCCCAATAAGGAACGAGGATGAAAGCAGCGACAAGCAAAAAGAAACGGAGGCATCGGTTTCATCAATGAATGCACCCAGCCAGTTTTTTGAGTTCCTCCCATTGAAGAACTGA 1050 0.4476 MWMVGYNEGGEFNNMADYAFNGRKLRPLMPRPLTSPNNTSNTASPCLTRIHHANDFFSQYHNLVGDQGKREFNPPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAATEARDFDTTLVEKKDSFLGASRSVFEVEQTKNWPPSTNCSTLAEESVSIQRAAKAAIAECRTDGWLQFDEGELQHRRNFMERNATWQMMQLSCPSPPTVSPHLINTPPLTSTTSMATTVTARVMDPKLIKTHDLSFFISPNRTSINTQDDNCGESHDQTLQLFPIRNEDESSDKQKETEASVSSMNAPSQFFEFLPLKN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2647 349 SMART HOX_1 78 145 IPR001356 GO:0003677
Aed5g2647 349 Pfam Homeodomain 81 140 IPR001356 GO:0003677
Aed5g2647 349 Gene3D - 79 141 - -
Aed5g2647 349 PANTHER WUSCHEL, PUTATIVE-RELATED 35 349 - -
Aed5g2647 349 SUPERFAMILY Homeodomain-like 81 147 IPR009057 -
Aed5g2647 349 ProSiteProfiles 'Homeobox' domain profile. 86 141 IPR001356 GO:0003677
Aed5g2647 349 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 35 349 IPR044555 GO:0003700|GO:0099402
Aed5g2647 349 CDD homeodomain 82 142 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2647 Aed-Chr5 27078452 27080370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2647 1 349 Wox Gene Family AT3G18010 40.741 5.12e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Aed5g2647 Homeodomain 9.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2647 - - gmx:100777274 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2647 5 27078452 27080370 Aed5g2647 5 27078452 27080370 ECH