Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2642 ATGGCTTCAAGATTCTGGACCCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGTGATTATGAGGAGGAGGTTGACCCCACTGGGGGTGAATCTGGCGGTCAAGCAGTGACAAGCAGGTACCTGCAGGACAATGCAAGTGACAGTGATGACTCCGATGGCCAGAAGCGTGTTGTGAGGTCAGCAAAAGATAAGCGTTTTGAGGAGATGGCTTCCACTGTTGACCAGATGAAGAATGCCATGAAGATCAACGACTGGGTGAGCTTGCAAGAGAGTTTTGACAAGATTAACAAACAGCTTGAGAAAGTCATGCGTGTCACTGAATCTGAGAAGGTTCCCAATCTTTACATCAAGGCACTAGTGATGTTGGAAGATTTCTTGACTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCTAAAGCCTTGAATTCAATGAAGCAGAAGCTGAAGAAGAATAATAAGCAGTATGAGGACTTGATTAATAAGTGCAGGGAGAACCCTGAGAGTGAGGAGGAAAAAGAAGAGGAGAGCGAGGCAGACTATGAAAGTGATGATGAGATTATTGACCCAGACCAGCTTCGAAAATCAGAAGCAAAATCTGATTCGGAAGCCTCTCAGTATGAAGATGAAAGGCCAGATTCTGGTGATGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACAGGCTTTTCGATAGACAGTTCATGAAAAACCCTAGTGAGATCACGTGGGACACGGTTAACAAGAAGTTTAAAGAGGTTGTGGCTGCTAGGGGAAGAAAAGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTCACTTTCTTAACAAAAGTTGCTAAAACACCTGCACAGAAGCTGGAAATTCTTTTCAGTGTGGTATCTGCTCAGTTTGATGTTAACCCAGGCCTCAATGGCCATATGCCCATAAATGTATGGAAAAAATGTGTGCAGAACATGCTGATCATTCTTGATATTTTAGTGCAGTACCCAAACCTAGTGGTTGATGATTCCGTGGAACCAGATGAGAATGAAACTCAGAAAGGTGCTGAACATAATGGACCAATTCAGGTTTGGGGTAACTTGGTTGCTTTCTTGGAAAGAATTGATGTTGAGTATTTCAAGAGCCTGCAGTGCATTGATCCTCATACACGTGACTATGTTGAGAGACTTAGGGATGAACCCACGTTTCTGGTTCTTGCACAGAATGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCCGCTTCTAAGGTTGCCTTGAGGAGGGTTGAGCTCATTTACTACAAACCACAAGGGGTTTACGATGCTATGAGAAAGTTGACCGAGTTGACAGAAGATGGAGATAATGGAGGGGAGGCAAGTGAGGAAGCAAAAGAATTTGAGGAATCAAGAATTCCTACCGCATTTGTTGTTACCTCGGAGGTTGTGGCACGGAAACCCACCTTCCCTGAGAATAGTAGGACCCTAATGGATGTATTGGTATCTTTGATATATAAATATGGAGATGAGCGAACTAAAGCACGTGCAATGCTCTGTGATATATATCAGCATGCGCTTCTTGATGAGTTCTCAATAGCTCGAGATCTGCTGCTAATGAGCCATTTGCAAGATAGTGTTCAGCATATGGACATTTCAACGCAGATACTTTTTAACAGAGCTATGTCACAGTTAGGTTTATGTGCTTTCCGGGTTGGACTTATTTCTGAAGCACATGGCTGTCTGTCTGAACTCTACTCTGGTGGAAGGGTGAAGGAGTTGCTGGCACAAGGGGTGTCACAAAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGACAGATGCCGTATCATATGCACATCAATCTTGAGCTCCTGGAAGCAGTACATCTTGTATCTGCTATGCTGCTGGAAGTTCCTAATATGGCAGCCAATGTTCATGATGCCAAACGGAAGGTCATTAGTAAGAATTTCCGTCGCTTGCTTGAGGGAAGCGAGAAACAAACATTTACTGGTCCACCGGAAAATGTCAGAGATCATGTTATGGCTGCCACAAGGGTTCTTCGCAAAGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTTGATGTATGGAAATTTGTGAGAAATCGAGACACCGTACTTGAAATGCTGAAGGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTCTCTGCATCTTATGAATCCTTGAGCCTGGATCAGCTCACAAATTTTTTTGATCTCTCTGTTTCTCGCACTCATAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTCTTTTCCAAGATGTTGAACACTCTAGGCTGCAGGCATTGGCATTCCAATTGACAGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAAAGCCACAGAAGCAAGGATAGGTGGTGGTGGACTGGATCTGCCTCTAAGGCGGAGGGATGGGCAGGACTATGCTGCCGCTGCTGCTGCCGGTAGTGGAACAGGCTCTTCAGGTGGTAGGTGGCAAGACCTGTCCCTTTCTCAACCAAGGCAAGGCAGCGGGCGTGCAGGGTATGGTGGCAGTGGTGGAAGGCCAATGGCATATGGCCAAGCAGCTGGGAGTGGCTATTCAAGGGGACGCGGAACATATGGAGGTGGTGGTTCAGGGAGGACTTCTCAAAGGGGTTCAGCATTGAGGGGACCCCAGGGCGATGTATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGTGCTTGA 2793 0.4565 MASRFWTQGGSDSEEEESDYEEEVDPTGGESGGQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDFLTQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKCRENPESEEEKEEESEADYESDDEIIDPDQLRKSEAKSDSEASQYEDERPDSGDGPWDQKLSKKDRLFDRQFMKNPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLIILDILVQYPNLVVDDSVEPDENETQKGAEHNGPIQVWGNLVAFLERIDVEYFKSLQCIDPHTRDYVERLRDEPTFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQGVYDAMRKLTELTEDGDNGGEASEEAKEFEESRIPTAFVVTSEVVARKPTFPENSRTLMDVLVSLIYKYGDERTKARAMLCDIYQHALLDEFSIARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNMAANVHDAKRKVISKNFRRLLEGSEKQTFTGPPENVRDHVMAATRVLRKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFSASYESLSLDQLTNFFDLSVSRTHSIVSRMMINEELHASWDQPTGCILFQDVEHSRLQALAFQLTEKLSILAESNEKATEARIGGGGLDLPLRRRDGQDYAAAAAAGSGTGSSGGRWQDLSLSQPRQGSGRAGYGGSGGRPMAYGQAAGSGYSRGRGTYGGGGSGRTSQRGSALRGPQGDVSTRMVSLKGVRA 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2642 930 ProSiteProfiles PCI domain profile. 619 791 IPR000717 -
Aed5g2642 930 SMART PINT_4 720 808 IPR000717 -
Aed5g2642 930 SUPERFAMILY "Winged helix" DNA-binding domain 715 790 IPR036390 -
Aed5g2642 930 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 925 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aed5g2642 930 MobiDBLite consensus disorder prediction 848 867 - -
Aed5g2642 930 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 720 808 - -
Aed5g2642 930 MobiDBLite consensus disorder prediction 134 154 - -
Aed5g2642 930 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 870 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aed5g2642 930 Pfam PCI domain 659 787 IPR000717 -
Aed5g2642 930 MobiDBLite consensus disorder prediction 12 26 - -
Aed5g2642 930 MobiDBLite consensus disorder prediction 133 227 - -
Aed5g2642 930 MobiDBLite consensus disorder prediction 155 174 - -
Aed5g2642 930 MobiDBLite consensus disorder prediction 899 913 - -
Aed5g2642 930 MobiDBLite consensus disorder prediction 838 930 - -
Aed5g2642 930 MobiDBLite consensus disorder prediction 45 63 - -
Aed5g2642 930 MobiDBLite consensus disorder prediction 1 63 - -
Aed5g2642 930 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 925 - -
Aed5g2642 930 Coils Coil 144 171 - -
Aed5g2642 930 MobiDBLite consensus disorder prediction 175 192 - -
Aed5g2642 930 MobiDBLite consensus disorder prediction 193 227 - -
Aed5g2642 930 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 651 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aed5g2642 930 Gene3D - 726 795 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2642 Aed-Chr5 27035127 27041767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2642 1 930 Eukaryotic Initiation Factors Gene Family AT3G56150 69.132 0.0 1189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2642 K03252 - gmx:100779751 1605.11