Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2640 ATGGATCCAACTACGTCTACTATCCCTCCCTCTCCGACCATAGCCATAACCACCACCGTCCCCTTCACTATCGAACCCGACAATCACGCCGACAACGCCAACCCTTCTTACGATGAGATGATATACACAGCAATCGGGGCTCTGAAGGAGAAAGATGGTTCGAGCAAGCGAGCCATAGGGAAGTACATAGAACAAGTGTACAAGGAGCAGCTTCCACCAACCCACTCTGCTTTGTTGACTCACCATCTCAACCGTTTGAAATCCGCTGGCCTTCTCTCCATAGTCAAAAAATCCTACAAGCTCCCTGGATCTGATCCTCTTCCTCAACCCCAGAAGAGCCGTGGTCGCCCCCCTAAGCCCAAACCCTACCCCATCATCGACTCCGCTAAGAAAGGACCGGGCCGTCCTAAAAAGATTGGAGGAGCCGTGGGTGTCACCGTGAGCCCGGGCCCGGTTGTGCCAGGCAGAAGAGGTCGTCCACCTGGGACCGGGAGATCTAAGCTGCCCAAGAGGCCTGGCCGTCCTCCCAAGCCCAAATCCGTCTCTACCATCTCCACTGGCCTCAAACGACGTCCGGGCCGCCCACCTAAAGCCCAATCGAACATTAACGTCATCCCCTTCGCAGCCCCTGTTGCTCCCGCTGCCCTGCCCTTAGTTCCAACTGCTTCCGTGCCCAATGGGTCTTCCAGGCCCAGAGGAAGGCCCAAAAAGAGTGTTGCTGCTGCGGGAGCTCCGCTGCCATCTGCTGTCGTTGGTGCAGCCCGTGGCCGCGGACGCCCACGTGTGGTCTTTCCGGTGCTCAGGCCGGGTCGCCCTCAGAAGCTCGCTGTTGGAAGGCCCAAGAATCCTGCACGAAGGCCCGTGGGCCGCCCAAAGGGAGCAACAGCTGCTGCAATCACAGCGCATAAGGCTGCTCATGAAGATCTAAGGAAGAAACTTGAACACTTTCAATCAAAAGTGAAGGAGTCTCTTGGCACGCTGAAGCCATATTTTAACCATGAAAGTCCAGTCACTGCAATTGCGGCAATTCAAGAGTTGGAAGTACTGTCAACTTTGGACCTTAAAGCGCCATTGAGGGATGAGACGCAGCAACAGACACAGACACAGGTGTATGAACAGCAACATCCTGAGCCACAGCCTCAGCTGCAACAATTTTTGGAACCACATACATCACCCCGAAGCTAG 1185 0.5536 MDPTTSTIPPSPTIAITTTVPFTIEPDNHADNANPSYDEMIYTAIGALKEKDGSSKRAIGKYIEQVYKEQLPPTHSALLTHHLNRLKSAGLLSIVKKSYKLPGSDPLPQPQKSRGRPPKPKPYPIIDSAKKGPGRPKKIGGAVGVTVSPGPVVPGRRGRPPGTGRSKLPKRPGRPPKPKSVSTISTGLKRRPGRPPKAQSNINVIPFAAPVAPAALPLVPTASVPNGSSRPRGRPKKSVAAAGAPLPSAVVGAARGRGRPRVVFPVLRPGRPQKLAVGRPKNPARRPVGRPKGATAAAITAHKAAHEDLRKKLEHFQSKVKESLGTLKPYFNHESPVTAIAAIQELEVLSTLDLKAPLRDETQQQTQTQVYEQQHPEPQPQLQQFLEPHTSPRS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2640 394 Gene3D - 29 114 IPR036388 -
Aed5g2640 394 Coils Coil 299 319 - -
Aed5g2640 394 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 33 103 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed5g2640 394 PANTHER HISTONE H1-LIKE 20 261 - -
Aed5g2640 394 PANTHER HISTONE H1-LIKE 268 368 - -
Aed5g2640 394 PANTHER HISTONE H1 268 368 - -
Aed5g2640 394 SMART h15plus2 31 98 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed5g2640 394 SMART AT_hook_2 229 241 IPR017956 GO:0003677
Aed5g2640 394 SMART AT_hook_2 285 297 IPR017956 GO:0003677
Aed5g2640 394 SMART AT_hook_2 130 142 IPR017956 GO:0003677
Aed5g2640 394 SMART AT_hook_2 111 123 IPR017956 GO:0003677
Aed5g2640 394 SMART AT_hook_2 189 201 IPR017956 GO:0003677
Aed5g2640 394 SMART AT_hook_2 254 266 IPR017956 GO:0003677
Aed5g2640 394 SMART AT_hook_2 154 166 IPR017956 GO:0003677
Aed5g2640 394 PANTHER HISTONE H1 20 261 - -
Aed5g2640 394 Pfam linker histone H1 and H5 family 35 96 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed5g2640 394 MobiDBLite consensus disorder prediction 218 253 - -
Aed5g2640 394 CDD H15 33 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed5g2640 394 MobiDBLite consensus disorder prediction 100 201 - -
Aed5g2640 394 PRINTS AT-hook-like domain signature 128 139 IPR017956 GO:0003677
Aed5g2640 394 PRINTS AT-hook-like domain signature 227 237 IPR017956 GO:0003677
Aed5g2640 394 PRINTS AT-hook-like domain signature 111 121 IPR017956 GO:0003677
Aed5g2640 394 MobiDBLite consensus disorder prediction 272 293 - -
Aed5g2640 394 SUPERFAMILY "Winged helix" DNA-binding domain 33 110 IPR036390 -
Aed5g2640 394 MobiDBLite consensus disorder prediction 359 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2640 Aed-Chr5 27017802 27021011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2640 34 107 Single Myb Histone (SMH) Gene Family AT1G49950 43.243 1.00e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2640 - - gmx:547676 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2640 5 27017802 27021011 Aed5g2640 5 27017802 27021011 ECH