Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2629 ATGTTTGTTTTGTTTGTAATGATAGATATTGAGGAGGACATCCGTTCTTTACAGCTTGAGTCAACAGAAGACCATAATGGGGTGGTAAATCCAGAGGATGGAAAGCCGGAAGAAGTTGAGAAATCTGGTCAGATGGATGAAGATCCAAAGGAGGAGGTTCAGCCACAGGCTGTTGAGGCTGAGCCAAAAGTGAAAGATAAGGAGATTCCTTCTGTTCAAGAAGAAGAAGATGAACCAGAGATGACAAAAAGACACTTGAACGTTGTCTTTATTGGCCATGTCGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAAGTTGATGAACGGACTATCCAAAAATATGAGAAAGAGGCTAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAGACTGAGACAACAAGGTTTACTATTTTGGATGCACCTGGTCACAAAAGCTATGTTCCTAACATGATTAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTTATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATACGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACGCTGGGTGTGTCTAAGCTGCTTGTTGTTGTCAATAAAATGGATGAGCCTACAGTGCAGTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGGTTCCATTTCTAAAGCAATCTGGATACAATGTAAAGAAAGATGTCTTGTTTTTACCAATATCTGGTCTAATGGGTGCAAACATGAAAACAAGAGTGGATAAAAGTGTTTGTCCATGGTGGAATGGTCCTTGCTTATTTGAGGCCCTTGATGCTATTGAAGTTCCACTACGAGATCCCAAAGGTCCTTTCAGGATGCCTATTATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGTAGCGTCCGTGAGGGAGATTCCTTATTGGTCATGCCAAATAAGGATCAAGTAAAAGTTGTTGCCATATTCATTGACGAAGATCGTGTTAAACGTGCTGGACCTGGTGAAAATTTACGGATTAGAATATCTGGTGTTGAAGATGAAGACATATTATCTGGGTTTGTCCTTTCTAGTGTTGCTAATCCAATACATGCAGTTACTGAGTTTGTTGCTCAGTTGGTGATCCTTGAATTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATCCACTCTGTGGTTGAGGAGTGTGAGATTGTTGAACTTTTACAGCAAATTGATACAAAGACAAGGAAGCCTTTGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCTGTTGTGGTGTGCCGCGTTCAGGTTAATAACTCTATTTGCATTGAGAAGTTCTCTGATTTTCCACAACTTGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCCGTGGGAAAAGTCACTGGTCTGATGGGCATAATTGACACCCTTCAGCACAAATTAATGGAGTGA 1569 0.413 MFVLFVMIDIEEDIRSLQLESTEDHNGVVNPEDGKPEEVEKSGQMDEDPKEEVQPQAVEAEPKVKDKEIPSVQEEEDEPEMTKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDEPTVQWSKERYDEIESKMVPFLKQSGYNVKKDVLFLPISGLMGANMKTRVDKSVCPWWNGPCLFEALDAIEVPLRDPKGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKDQVKVVAIFIDEDRVKRAGPGENLRIRISGVEDEDILSGFVLSSVANPIHAVTEFVAQLVILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDTKTRKPLKKKVLFVKNGAVVVCRVQVNNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGLMGIIDTLQHKLME 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2629 522 SUPERFAMILY Translation proteins 306 399 IPR009000 -
Aed5g2629 522 Gene3D Translation factors 401 510 - -
Aed5g2629 522 PRINTS GTP-binding elongation factor signature 182 193 IPR000795 GO:0003924|GO:0005525
Aed5g2629 522 PRINTS GTP-binding elongation factor signature 166 176 IPR000795 GO:0003924|GO:0005525
Aed5g2629 522 PRINTS GTP-binding elongation factor signature 87 100 IPR000795 GO:0003924|GO:0005525
Aed5g2629 522 PRINTS GTP-binding elongation factor signature 226 235 IPR000795 GO:0003924|GO:0005525
Aed5g2629 522 CDD eRF3_II 314 395 - -
Aed5g2629 522 Pfam Elongation factor Tu GTP binding domain 83 290 IPR000795 GO:0003924|GO:0005525
Aed5g2629 522 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 83 312 IPR000795 GO:0003924|GO:0005525
Aed5g2629 522 Pfam Elongation factor Tu domain 2 327 393 IPR004161 GO:0005525
Aed5g2629 522 CDD eRF3_C_III 401 509 - -
Aed5g2629 522 Pfam Elongation factor Tu C-terminal domain 399 508 IPR004160 -
Aed5g2629 522 Gene3D Translation factors 312 397 - -
Aed5g2629 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 318 IPR027417 -
Aed5g2629 522 PANTHER TRANSLATION FACTOR 78 507 - -
Aed5g2629 522 MobiDBLite consensus disorder prediction 18 81 - -
Aed5g2629 522 Gene3D - 64 307 IPR027417 -
Aed5g2629 522 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 403 509 IPR009001 -
Aed5g2629 522 PANTHER BNAA06G12300D PROTEIN 78 507 - -
Aed5g2629 522 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 139 154 IPR031157 -
Aed5g2629 522 CDD EF1_alpha 87 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2629 Aed-Chr5 26945068 26951910 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2629 83 504 Eukaryotic Initiation Factors Gene Family AT5G60390 38.118 2.33e-97 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2629 K03267 - gmx:100793653 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2629 5 26945068 26951910 Aed5g2629 5 26945068 26951910 ECH