Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2626 ATGGATCCGTCCAAAAAAGTGGCCGATAGATATCTGAAGCGTGAAGTCCTTGGTGAAGGTACCTATGGAGTTGTCTACAAAGCCATTGATACCCACACAGGGCAGACGGTTGCAATTAAGAAAATTCGGCTTGGCAAGCAGAAAGAAGGGGTAAATTTTACAGCTCTTAGAGAAATTAAGCTGCTAAAAGAGCTCAAAGATCCAAACATTGTTGAATTGATTGATGCATTCCCTCATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTTGAAGCTGTCATTCGAGACCGAAATATTTTTCTTTCACCGTCTGATACAAAATCCTACCTTCAAATGACGCTAATAGGCCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTATTGATAGGATCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATGTTTGGAAGCCCAGATCGAACGTTCACTCATCAGGTTTTCGCTCGGTGGTATAGAGCTCCTGAGCTATTATTTGGTGCCAAGCATTATAGTTCTGGAGTTGATGTTTGGGCTGCAGGTTGTATATTTGCTGAACTTCTTCTTCGTCGACCTTTTTTACAGGGTACAAGTGACATTGATCAATTAGGAAAGATTTTTTCAGCATTTGGCACTCCAACGGCTTCTCAGTGGCCTGATATGGTATACCTGCCTGATTATGTCGAATATCAATATGTTCCTGCCCCCCCTCCACGTTCTTTATTTCCGATGGCAAGTGATGATGCTTTGGATCTGTTGTCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGCGCAGCAGGCACTAGAGCATAGGTACTTTTCTTCTGCTCCTCTGCCTTCGGATCCAGACAAGCTCCCCAGACCTGCTCCCAAGAAGGAATCTAGGGCTTCTGATTTCAATTTACAGGAGGGTCCCACTGTATTATCACCTCCAAGGAAGTCTAGGAGAGTGATGCCAGGACGTGATGGGTTTGAAGGAAATTCTCTGCAAGCAGATAAGGTTGATGTCAGTTTTGGTGATTTCAGACAGACAACTGATGATAATACAGGCAAGAATGAATCAGCTCCAATGTCTGTAGATTTTTCTATCTTTGGATTAAAACCTCCAAATAGACCTACAATTAACAGTGCTGACAGATCATATTTAAAAAGAAAATTAGATCTAGAATTTCAACAACCAGAATGA 1239 0.4132 MDPSKKVADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIVELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPSDTKSYLQMTLIGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARMFGSPDRTFTHQVFARWYRAPELLFGAKHYSSGVDVWAAGCIFAELLLRRPFLQGTSDIDQLGKIFSAFGTPTASQWPDMVYLPDYVEYQYVPAPPPRSLFPMASDDALDLLSKMFTYDPKARISAQQALEHRYFSSAPLPSDPDKLPRPAPKKESRASDFNLQEGPTVLSPPRKSRRVMPGRDGFEGNSLQADKVDVSFGDFRQTTDDNTGKNESAPMSVDFSIFGLKPPNRPTINSADRSYLKRKLDLEFQQPE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2626 412 ProSiteProfiles Protein kinase domain profile. 11 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2626 412 Pfam Protein kinase domain 13 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2626 412 MobiDBLite consensus disorder prediction 292 396 - -
Aed5g2626 412 CDD STKc_CDK7 10 304 IPR037770 GO:0005675|GO:0008353|GO:0070985
Aed5g2626 412 PANTHER CELL DIVISION PROTEIN KINASE 7 354 - -
Aed5g2626 412 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Aed5g2626 412 ProSitePatterns Protein kinases ATP-binding region signature. 17 41 IPR017441 GO:0005524
Aed5g2626 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Aed5g2626 412 MobiDBLite consensus disorder prediction 359 374 - -
Aed5g2626 412 SMART serkin_6 11 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2626 412 PANTHER CYCLIN-DEPENDENT KINASE D-2 7 354 - -
Aed5g2626 412 Gene3D Transferase(Phosphotransferase) domain 1 92 307 - -
Aed5g2626 412 SUPERFAMILY Protein kinase-like (PK-like) 7 298 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2626 Aed-Chr5 26934458 26938601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2626 1 408 Core Cell Cycle Gene Families AT1G73690 75.000 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Aed5g2626 Pkinase 5.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2626 K02202 - gmx:100776618 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2626 5 26934458 26938601 Aed5g2626 5 26934458 26938601 ECH
Aed5g2626 5 26934458 26938601 Aed7g0264 7 1862839 1869260 PCT