Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2615 ATGCCTGTCACACACACAACAACATCGACACCAACAGTGGCAGAACACGTCAAATGGAGAAGACCCAGAAACCAATTCAACCACCACCCCATTTCAGAAACAGATCCAAACCCTGAAATCCCTTCCATAATCCAATCCACTAGGTGCAAGTCCACCATTTCCTCCATGCTCCTCTCCACTTTCTCTAACAACACCTCCTCCAATAGTGACACCCCTACCCCCACCACCATCAATGCCACTGCCCATAGCAAGAAAAAAAGCAACTTTTCTGCATCAACCTTCAGAGGGTTGGGCTGCACCGCCGGCGCGTCGCAGCAGGTGTCGGTGCCGGCGGTGATTCGCTCCTCCGCCGATTGGCAAGGGAAGAAAACAAGAAAAAAGAAGCACAAGAGAAGCAACAGCAGCAGCAAGAACAAGACTTTCCATGGTGGGGTTCTAGAAGGTTCCAATCCAGGGTGTGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAACAGATGCTGCTCCCTCTGTTGATTGTGTCGTGGCCAGGAAGAATGTCGCCGCAAGAGGGAAAATTGATGTGGATAAGATCACTCACAGGGAGCGATCATCTTATGCGGGAAGGCGCACAGAAACCTTAACTTTTCTGGACACTGATCCTACTGACATTTTCACACCACGCTCTGCCTCTGACACTTTTGGAACTGCAACATACTATCGTCATGTTAGAGATCCTTCTTCTGATGGTTTTGCTGAGATGATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTACATTCACGTGATCAATTCAGAGACTGGAGACTTGATGTTGATAGTATGTCCTATGAGCAATTGCTAGAACTTGGTGAGAGAATTGGTCATGTGAACACTGGACTCAAGGAAGATGAGATGGGACGGAACATAAGGAAGACTAGGCTTCCATTTTGGGATCAAACAGATAAAGAGTGCAGCATTTGTCAAGAGGAGTATGAAGCAGGTGATGAGTTGGGGAGGCTAAATTGTGAGCACAGTTATCACTTTCAGTGTATAAAACAATGGGTTGCACACAAAAATTTCTGCCCAGTATGTAAGCAACAAGTTGCAGCTCGATACTGA 1116 0.4704 MPVTHTTTSTPTVAEHVKWRRPRNQFNHHPISETDPNPEIPSIIQSTRCKSTISSMLLSTFSNNTSSNSDTPTPTTINATAHSKKKSNFSASTFRGLGCTAGASQQVSVPAVIRSSADWQGKKTRKKKHKRSNSSSKNKTFHGGVLEGSNPGCVDFQDVWCGPGIGFSTDAAPSVDCVVARKNVAARGKIDVDKITHRERSSYAGRRTETLTFLDTDPTDIFTPRSASDTFGTATYYRHVRDPSSDGFAEMMMLQGSLLMGGQLHSRDQFRDWRLDVDSMSYEQLLELGERIGHVNTGLKEDEMGRNIRKTRLPFWDQTDKECSICQEEYEAGDELGRLNCEHSYHFQCIKQWVAHKNFCPVCKQQVAARY 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2615 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 8 370 IPR045191 GO:0061630
Aed5g2615 371 ProSiteProfiles Zinc finger RING-type profile. 323 364 IPR001841 -
Aed5g2615 371 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 8 370 - -
Aed5g2615 371 Pfam Ring finger domain 321 364 IPR001841 -
Aed5g2615 371 MobiDBLite consensus disorder prediction 114 144 - -
Aed5g2615 371 MobiDBLite consensus disorder prediction 62 82 - -
Aed5g2615 371 MobiDBLite consensus disorder prediction 121 136 - -
Aed5g2615 371 SMART ring_2 323 363 IPR001841 -
Aed5g2615 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 370 IPR013083 -
Aed5g2615 371 SUPERFAMILY RING/U-box 311 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2615 Aed-Chr5 26862114 26866229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2615 13 283 C3H Transcription Factor Family AT1G73760 43.493 8.71e-55 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2615 - - gmx:100819907 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0244 7 1705114 1710300 Aed5g2615 5 26862114 26866229 ECH
Aed5g2615 5 26862114 26866229 Aed5g2615 5 26862114 26866229 ECH