Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2592 ATGGTGACAAGAAGAAAGGTCCTCCAGCTGTTATTATCAACCCTAAACGTTTCTGAGCTAATTCCCCAGCAGCACGCCGCCAATGCATCATTATTATTTTCCAAAACCCTTAGGGTTTACGGAACCCAAGCAATAGCATCATCGGGGTCCTCGAAATTCCTCGAATACGAGATGCCATCGGTGACGTGGGGCGTGATCCAGGGTCGGAAGGAGAAGCTCGTTTCTCGAGTAATCATTTTCGACTACCTCAAGGCTTTAGGAATCATCCCCGATGAATTGCACGACCTCGAGCTTCCCTCCACCGTCGATGTCATGCGTGAGCGCGTCGAGTTTCTTCAGAAACTAGGTCTCTCCGTCGACGACATCAACACTTACCCTTTAATGTTAGGTTGCAGTGTCAGAAAAAACATGATACCCGTCTTGGGCTACTTGGAGAAAATTGGGATTCCAAGGCCCAAACTTGGGGGATTCGTTAAGAATTACCCGCAGGTGTTGCACGCTAGTGTCATTGTTGAGCTCGCTCCCGTTGTTAAGTTCCTCAGGGGTCTCGATGTGGAAAAAGACGATATTGGGTATGTGTTGCAAAAGTATCCTGAACTTCTTGGCTTCAAGCTTGAGGGCACTATGAGCACTTCCGTGGCTTATCTTGTTAGCATTGGTGTCATTCCTAGAGATATTGGTCCAATGGTCACCCAGTATCCTTATCTTTTAGGGATGAGAGTTGGGACTGTTATAAAGCCAATCATTGATTACTTGGTCGATTTGGGGCTGCCCAAGAAGGTTTTGGCTAGGATGTTGGAGAAGAGAGCTTATGTACTTGGCTATGATCTTCAGGAGACTGTGAAACCCAATGTCGAATGTTTGATTAGTTTTGGTGTGAGGAGGGAGTGTTTGGCTTCGGTTATTGCTCAATATCCGCAGATTCTAGGCCTGCCTCTTAAGGCTAAGTTGTCCTCGCAGCAATACTTTTTCAGTTTGAAGCTTAAGGTTGATCCCGAAGGGTTTGCACGTGTGGTGGAGAACATGCCACAGGTGGTTAGCCTCCACCAACATGTGATTATGAAGCCGGTTGAGTTCCTCCTTGGAAGGACTATACCCGCGCAGGACGTGGCCAGTATGGTGATCAGGTGTCCTCAGTTGGTGGCACTGAGAGTTGAGCTCATGAAGAACAGCTTTTACTTCTTCAAGAGTGAGATGGGGAGGCCCTTGCAGGAGCTTGTGGAATTCCCGGAGTACTTTACTTATAGTTTGGAGTCCAGGATCAAACCCAGATACCAGAGGCTGAAGAGTAAAGGGATAAGGTGTTCCTTGAATTGGATGCTGAACTGTAGTGACCAGAGGTTTGAAGAGAGGTTGCAGGGTCAATACATTGAAACTGAAAGTGTAGGTCCCAGATTCTCTATGGGAGGGAAATTAGAGCTACCAGGGAATGGCATGGTGTCAGATGAGGAAGAGGAGAGTGATGATGAAGTATTATACAGACGAACTGTTTCTCTTTAG 1500 0.47 MVTRRKVLQLLLSTLNVSELIPQQHAANASLLFSKTLRVYGTQAIASSGSSKFLEYEMPSVTWGVIQGRKEKLVSRVIIFDYLKALGIIPDELHDLELPSTVDVMRERVEFLQKLGLSVDDINTYPLMLGCSVRKNMIPVLGYLEKIGIPRPKLGGFVKNYPQVLHASVIVELAPVVKFLRGLDVEKDDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVIPRDIGPMVTQYPYLLGMRVGTVIKPIIDYLVDLGLPKKVLARMLEKRAYVLGYDLQETVKPNVECLISFGVRRECLASVIAQYPQILGLPLKAKLSSQQYFFSLKLKVDPEGFARVVENMPQVVSLHQHVIMKPVEFLLGRTIPAQDVASMVIRCPQLVALRVELMKNSFYFFKSEMGRPLQELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGQYIETESVGPRFSMGGKLELPGNGMVSDEEEESDDEVLYRRTVSL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2592 499 PANTHER CGI-12 PROTEIN-RELATED 47 482 IPR003690 GO:0003690|GO:0006355
Aed5g2592 499 SMART mt_12 336 366 IPR003690 GO:0003690|GO:0006355
Aed5g2592 499 SMART mt_12 227 258 IPR003690 GO:0003690|GO:0006355
Aed5g2592 499 SMART mt_12 403 434 IPR003690 GO:0003690|GO:0006355
Aed5g2592 499 SMART mt_12 191 222 IPR003690 GO:0003690|GO:0006355
Aed5g2592 499 SMART mt_12 371 402 IPR003690 GO:0003690|GO:0006355
Aed5g2592 499 SMART mt_12 155 186 IPR003690 GO:0003690|GO:0006355
Aed5g2592 499 SMART mt_12 263 294 IPR003690 GO:0003690|GO:0006355
Aed5g2592 499 SMART mt_12 119 150 IPR003690 GO:0003690|GO:0006355
Aed5g2592 499 SMART mt_12 299 331 IPR003690 GO:0003690|GO:0006355
Aed5g2592 499 Pfam mTERF 141 449 IPR003690 GO:0003690|GO:0006355
Aed5g2592 499 Gene3D Transcription termination factor 3, mitochondrial 244 459 IPR038538 -
Aed5g2592 499 Gene3D Transcription termination factor 3, mitochondrial 105 243 IPR038538 -
Aed5g2592 499 PANTHER EXPRESSED PROTEIN 47 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2592 Aed-Chr5 26672354 26673853 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aed5g2592 mTERF 1.4e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2592 K15032 - gmx:100809590 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2592 5 26672354 26673853 Aed7g0255 7 1803259 1806610 PCT