Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2580 ATGTTTAGGGACAAGACCACCCACTCTCACTCTCTAACCCAATTTAGTAGCGTCAAAGAACTCGCCGCAACTCTTGAAACCGATCTCAAGCATGGCATCACCGATACCAAGGATCATATCGATCACCGAAAACGTGTTTTCGGTCTCAACGTCTTCACCAAACCTCCTTCCAGAGGCTTTCTTTCTTTTGTCCTTGAATCTTTTAAAGACACCACTATTGTTATTCTTCTGGTTTGTGCTGTGCTTTCCCTTGGCTTTGGCATCAAACAACATGGCTGGAAGGAGGGCTGGTACGATGGAGGTAGCATCATATTGGCAGTTATTCTTGTCATTGTTGTCTCTTCTGTCAGCAACTTCAACCAAGCTAGACAGTTCCAGAAGCTTTCTGCAAAAAGTGCCAACATAGGAGTCGAAGTTGTACGAGGTGGTAGACGCCAAAACGTGTCAATCTTTGACGTGGTCGTGGGTGACATTGTGTACTTGAAGATTGGTGATCAGGTTCCGGCTGATGGGGTGTTTTTGGAGGGGCATTCGTTGAAGGTGGATGAGTCTAGCATGACCGGGGAGAGTGACCAGGTGAATGTGAACGGTGAGACCAACCCTTTCTTGTTATCTGGCACCAAGGTCACTGATGGTTTTGCACACATGCTTGTTACTTCTGTGGGTATGAAGACTGCATGGGGTGCCATGATGGGTTCGATTACCGGAGAGGTCAATGAGGAGACACCTTTGCAACTGCGTCTCAACAAACTCACTTCTGCTATTGGCAAGCTTGGCTTGTTGGTGGCTGCACTTGTTTTGGTCGTGTCCATCATACGCTACTTCACGGGAAGCACTATAGATGACTTTGGGAACCGGGAATTTGTTCGGGGAAAGACCGAGTTTGATGATGCTATGAATGCGGTTATTGGGATTGTTGCTGCCGCTGTTACAATTGTGGTGGTGACGATTCCTGAAGGGCTGCCCCTGGCTGTTACTCTTACTTTGGCTTATTCTATGAAGAAAATGATGAGGGATAATGCCATGGTTAGGAGAATCTCTGCTTGCGAGACAATGGGGTCTGCTACAATAATCTGCACTGATAAAACAGGTACGCTTACAATGAATGAGATGAAGGTCACAGAGGTTTGGGTTGGGAAAAAGGAAATAGGAGAAGATCGGTATTTGGAGCCAAGTTTAGTCCATTTATTGAAAGAAGGGATTGTATTAAATACCACTGGAAGTGTTTATCAGCCGCAACAAACTTCGCTGCCAGCTGAGATTTCTGGTAGTCCTATTGAGAAAGCGTTGCTTTCTTGGGCGGTGGTGGATTTGGGGATGGACGTTGATCATGTGAAGCAGCATTGCGAGATAATTCATATGGAGACCTTCAACTCTGAGAAAAAGAGAAGTGGGATTCTGATGAGGGAGAAGGGAGGAAGCAACAGGATTCAGACACATTGGACGGGAGCTGCTGAGATGATATTGGCTATGTGTTCAAATTATTATGACCATACAGGGGAAATCATAATCATGGATGATGGAGAAAGGGTTCAGATTGAAAACATTGTCAAGGGCATGGCAACAAAAAGTTTGAGATGTATTGCCTTTGCCCAAAAGAGTTTCAAGGGGCAGGACTGTGAAAAGCTTGAAGAGACAGGACTAACGTTGTTGGGGATACTTGGGTTGAAAGACCCTTGTAGGCCAGGAGTTGAAGCAGCAGTTGAATCATGCAAGAATGCTGGAGTCAAGATCAAGATGATCACTGGAGATAATGTGCACACGGCAAGGGCCATAGCCTCTCAATGTGGGATTCTCGACCCTAATGATGAATTGGATGAAGATGCAGTGGTTCAAGGCTTTCAATTCAGAAATTTCTCACACGAAGAGAGAATGGATAAGATTGACAGAATCAAAGTCATGGCCAGATCATCTCCATTTGACAAGCTTCTGATGGTTCAATGTTTAAAGCAGAAGGGTCATGTGGTGGCAGTCACTGGTGATGGCACAAATGATGCACTTGCTCTCAAAGAAGCTGATATTGGACTTTCAATGGGAATTCAAGGCACTGAAGTGGCAAAGGAGAGCTCAGATATTGTTATCCTTGATGACAATTTCTCTTCCGTGATCACAGTAGTACGGTGGGGAAGATGCGTGTACACAAACATTCAGAAGTTCATTCAGTTTCAGCTGACGGTCAACGTTGCTGCACTTGTCATCAACTTTGTAGCTGCAGTTTCTTCTGGCAAAGTGCCTCTTTCAGCTGTTCAACTTTTGTGGGTAAACCTGATCATGGATACTCTTGGAGCTTTGGCCTTGGCCACTGAGCAACCCACTAATGATCTCATGAAGATGCCACCTGTAGGAAGAGCAGAGCCACTTATAACTAGAGTTATGTGGAGGAACCTCATTTCACAAGCACTGTATCAGGTGCTTGTCTTGCTCATTTTACAATTCAAGGGGAGATCAATCTTTGATGTCAATGAGAAGGTGAAGAACACTATGATTTTCAATGCATTTGTCCTCTGCCAAGTCTTCAACGAGTTCAACGCAAGGAAGCTGAAGAAGAAGAACATCTTTGAGGGGATTGGTAAAAACAAGTTGTTCATAGTAATTGTTAGTTTAACCGTAGCTCTTCAGCTAGTAATGGTTCAGTTTCTGAAGAAGTTTGCCAATACTGAAGGATTGTCTTGGGAACAATGGGGTGTTTGTGTTGCCATTGGAGCTTTGTCTTGGCCAATTAGTTTGCTGGTGAAGTGTATCCCAGTTGTTCGCAACGAGTAG 2763 0.4466 MFRDKTTHSHSLTQFSSVKELAATLETDLKHGITDTKDHIDHRKRVFGLNVFTKPPSRGFLSFVLESFKDTTIVILLVCAVLSLGFGIKQHGWKEGWYDGGSIILAVILVIVVSSVSNFNQARQFQKLSAKSANIGVEVVRGGRRQNVSIFDVVVGDIVYLKIGDQVPADGVFLEGHSLKVDESSMTGESDQVNVNGETNPFLLSGTKVTDGFAHMLVTSVGMKTAWGAMMGSITGEVNEETPLQLRLNKLTSAIGKLGLLVAALVLVVSIIRYFTGSTIDDFGNREFVRGKTEFDDAMNAVIGIVAAAVTIVVVTIPEGLPLAVTLTLAYSMKKMMRDNAMVRRISACETMGSATIICTDKTGTLTMNEMKVTEVWVGKKEIGEDRYLEPSLVHLLKEGIVLNTTGSVYQPQQTSLPAEISGSPIEKALLSWAVVDLGMDVDHVKQHCEIIHMETFNSEKKRSGILMREKGGSNRIQTHWTGAAEMILAMCSNYYDHTGEIIIMDDGERVQIENIVKGMATKSLRCIAFAQKSFKGQDCEKLEETGLTLLGILGLKDPCRPGVEAAVESCKNAGVKIKMITGDNVHTARAIASQCGILDPNDELDEDAVVQGFQFRNFSHEERMDKIDRIKVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDALALKEADIGLSMGIQGTEVAKESSDIVILDDNFSSVITVVRWGRCVYTNIQKFIQFQLTVNVAALVINFVAAVSSGKVPLSAVQLLWVNLIMDTLGALALATEQPTNDLMKMPPVGRAEPLITRVMWRNLISQALYQVLVLLILQFKGRSIFDVNEKVKNTMIFNAFVLCQVFNEFNARKLKKKNIFEGIGKNKLFIVIVSLTVALQLVMVQFLKKFANTEGLSWEQWGVCVAIGALSWPISLLVKCIPVVRNE 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2580 920 Gene3D - 369 559 IPR023299 GO:0000166
Aed5g2580 920 Gene3D - 66 912 - -
Aed5g2580 920 Pfam haloacid dehalogenase-like hydrolase 357 673 - -
Aed5g2580 920 SFLD p-type atpase 341 712 IPR044492 -
Aed5g2580 920 Gene3D - 37 235 - -
Aed5g2580 920 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 9 916 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Aed5g2580 920 PANTHER CATION TRANSPORTING ATPASE 10 907 - -
Aed5g2580 920 SUPERFAMILY HAD-like 357 764 IPR036412 -
Aed5g2580 920 PANTHER CALCIUM-TRANSPORTING ATPASE 10 907 - -
Aed5g2580 920 Pfam E1-E2 ATPase 137 338 - -
Aed5g2580 920 SFLD Haloacid Dehalogenase 341 712 - -
Aed5g2580 920 PRINTS P-type cation-transporting ATPase superfamily signature 574 584 - -
Aed5g2580 920 PRINTS P-type cation-transporting ATPase superfamily signature 683 695 - -
Aed5g2580 920 PRINTS P-type cation-transporting ATPase superfamily signature 359 373 - -
Aed5g2580 920 PRINTS P-type cation-transporting ATPase superfamily signature 552 563 - -
Aed5g2580 920 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Aed5g2580 920 PRINTS P-type cation-transporting ATPase superfamily signature 659 678 - -
Aed5g2580 920 SUPERFAMILY Calcium ATPase, transduction domain A 137 233 IPR008250 -
Aed5g2580 920 PRINTS H+-transporting ATPase (proton pump) signature 513 531 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed5g2580 920 PRINTS H+-transporting ATPase (proton pump) signature 659 675 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed5g2580 920 PRINTS H+-transporting ATPase (proton pump) signature 691 716 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed5g2580 920 Pfam Cation transporting ATPase, C-terminus 744 913 IPR006068 -
Aed5g2580 920 Pfam Cation transporter/ATPase, N-terminus 17 83 IPR004014 -
Aed5g2580 920 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 917 IPR023298 -
Aed5g2580 920 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 365 564 IPR023299 GO:0000166
Aed5g2580 920 SMART Cation_ATPase_N_a_2 8 88 IPR004014 -
Aed5g2580 920 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 630 739 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed5g2580 920 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 302 387 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed5g2580 920 ProSitePatterns E1-E2 ATPases phosphorylation site. 361 367 IPR018303 -
Aed5g2580 920 Gene3D - 356 704 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2580 Aed-Chr5 26605559 26608321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2580 18 916 Primary Pumps ATPases AT3G63380 66.815 0.0 1171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2580 K01537 - gmx:100784119 1504.58