Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2560 ATGGACAAACACTTTTTGATTGGATACTGTCTTCTTTGTTCTCTCTTGGTTGTGCATGCAGGCAAACAATTGTCATGCAATGAAACCCCCTACCCCGGTGTGTGCAAGCATTACAGTGAAACTACCAACACATTGTCAACCCTAGATGCTTCAGCTTCTTCATTCCATGATATGGCCCTTAGGGTCACCATGGAGCAAGCCGTTCAGGCTTATAATCTTGTCTCAAACATGGACTTGAATAATTTCAAGGACAAGCGAGCCAAGTCTGCATGGGAAGATTGCATGGAGCTATATGAGAACACAATCTATCAGCTGAAACGCTCAATGAACTCAAACAATCTAAATGATAGGTTGACTTGGCAAAGTGCATCCATTGCGAACCATCAAACATGCCAAAATGGTTTCAATGAATTCAACCTTCCCTCTCACCTAAACTACTTCCCCTCCATGCTAAGCAACTTCTCTAAATTGCTTAGCAACTCCTTGTCCATTAGCAACGCTATGATGTCTTTGGCATCCCCATCGACCAAACAAATTGGTGGGCGAAGGTTGCTTTCAGATGGCTTATTCCCCTATTGGCTGTCAAGTTCAGATAGAAGGCTTCTTCAGGAAACAACATCAAAGGCTGATGTTGTGGTGGCACAGGATGGGAGCGGGAACTATAAGACCATATCAGAAGGCGTGGCTGCAGCTGCTAAGCTCAGTGGGAAAGGGCGTGTTGTTGTGCACGTCAAAGCTGGTGTCTACAAAGAGAATATTGATATCAAGAGGACTGTGAAGAACTTAATGATCGTTGGAGATGGGATGGATGCTACTATTGTTACTGGAAATCTTAATGCACAAGATGGTTCCACTACCTTTCGTACTGCTACTTTTGCGGTTTCTGGTGATGGGTTCATCGGTCGGGACATAACCTTCGAGAACACCGCGGGGCCGCAAAATCACCAAGCGGTGGCTGTCCGGTCCGGCGCGGACCACTCGGTGTTCTACAGGTGCAGCTTTAAGGGGTACCAAGACACCTTGTATGTCTACGCGAACCGGCAATTCTACCGTGACTGTGACATTTATGGAACCATAGACTTCGTTTTCGGTGACGCCGTGACGGTGCTTCAGAACTGCAACATCTATGTTCGGAAACCGATGAGCAACCAGCAGAACACGGTGACGGCACAAGCAAGAAGCGATCCAAACGAGAACACAGGGATCATAATCCATAACTGTCGTATCAGTGCGGCTGGGGACTTGAAGGCTGTGCAGGGGTCTTTCAGAACCTTCCTAGGTCGGCCATGGCAGAAGTATTCCAGGACTGTGGTCATGAAGAGTTCCCTTGATGGCTTGATTCACCCTGCAGGTTGGTGTCCGTGGAGTGGAAGCTTTGGTCTGAGCAGCCTCTATTACGCAGAATATGCGAATACTGGAGCAGGTGCCGGCACAGGAGGGAGAGTATCATGGGCAGGGTTTCATGTCATCTCCAGTACTGAAGCTATCAAGTTCACCGTTGCTAACTTCTTGGCTGGGGGCTCCTGGATTTCTGGGACCGGCGTGCCCTTTGATGCTGGTTTATGA 1566 0.4808 MDKHFLIGYCLLCSLLVVHAGKQLSCNETPYPGVCKHYSETTNTLSTLDASASSFHDMALRVTMEQAVQAYNLVSNMDLNNFKDKRAKSAWEDCMELYENTIYQLKRSMNSNNLNDRLTWQSASIANHQTCQNGFNEFNLPSHLNYFPSMLSNFSKLLSNSLSISNAMMSLASPSTKQIGGRRLLSDGLFPYWLSSSDRRLLQETTSKADVVVAQDGSGNYKTISEGVAAAAKLSGKGRVVVHVKAGVYKENIDIKRTVKNLMIVGDGMDATIVTGNLNAQDGSTTFRTATFAVSGDGFIGRDITFENTAGPQNHQAVAVRSGADHSVFYRCSFKGYQDTLYVYANRQFYRDCDIYGTIDFVFGDAVTVLQNCNIYVRKPMSNQQNTVTAQARSDPNENTGIIIHNCRISAAGDLKAVQGSFRTFLGRPWQKYSRTVVMKSSLDGLIHPAGWCPWSGSFGLSSLYYAEYANTGAGAGTGGRVSWAGFHVISSTEAIKFTVANFLAGGSWISGTGVPFDAGL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2560 521 ProSitePatterns Pectinesterase signature 2. 355 364 IPR033131 -
Aed5g2560 521 CDD PMEI-like_3 24 170 - -
Aed5g2560 521 Gene3D - 204 521 IPR012334 -
Aed5g2560 521 SMART PMEI_2 17 164 IPR006501 GO:0004857
Aed5g2560 521 ProSitePatterns Pectinesterase signature 1. 236 255 IPR018040 -
Aed5g2560 521 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 169 IPR035513 -
Aed5g2560 521 PANTHER PECTINESTERASE 17 520 - -
Aed5g2560 521 SUPERFAMILY Pectin lyase-like 205 520 IPR011050 -
Aed5g2560 521 Pfam Pectinesterase 210 506 IPR000070 GO:0030599|GO:0042545
Aed5g2560 521 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 169 IPR035513 -
Aed5g2560 521 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 168 IPR006501 GO:0004857
Aed5g2560 521 Pfam Plant invertase/pectin methylesterase inhibitor 25 164 IPR006501 GO:0004857
Aed5g2560 521 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 17 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2560 Aed-Chr5 26482789 26485474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2560 10 521 Carbohydrate Esterase AT1G23200 53.102 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2560 - - gmx:100816802 886.715