Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2558 ATGACTCAGTCGATACAATACAACCGCGTGCTTTTCTTTTGTTGTTTTGCCTTAATTTCTTTCTATAAAGCAATTACTTCTCACTTGAACAAAAACATGAGAGGCTTCGCCATTCAAATTCCCCCAACCTATGTAACGATGACAACTCGTTCCAGCTCCTTCCTTGCTGCATCCATGCTCACACTTTGTTTCTTCTTAACAATTTTGCCGCAATCCTACTCTCAACAAAATGACACCAATAACTACTCTATTTGCAGCCAAGCATTCAGCTGTGGAACTCTCACAAACGTATCCTATCCTTTCTGGGGAGGGAACCGACCCCAGTTTTGTGGCCGCAATGGCTTCAAGCTCACCTGCATGCATAATCAAAACACTACTACTTCTCTTCAAGTTGGTCCCCAAAAATTCAATGTACTCGACATTAACCAAACTGCCTCCACCTTGAGAATGGTTAGAACAGATCTTGTCTATGATCGCTGCTCTTCCAATTTCACCAACACCTCTCTCAGTGCCACTCCCTTTACTTTTCTCCCCACCGTTCAGAATGTCACTATATTCTACGAATGCCCTTCTGAGAATTCACTTGCGGCCGTGGGTAACACTTTTGCGTGCCAGAATGATACTAACAAACATGCTTTCTATGTGGTCAATGGAACTCAGCTGGAGCAGTTCCCAGACCTTCACAAGTGTGCGGTTAGTGTTCAGGTGCAAGTTTCAGAGGGTGGAGTTGGGGCGCTGCTGGATCAAGGGTTTGATGTGCGGTACGAGTACGATGCAGAGTTGAGTTCTCAGTGCACAGCATGCAGGGATTCTGGAGGAGCATGTGGGACCAATGAGAATGATTCCGCTCACTTTTCCTGTTATTGCTCGGCTGGAGGTGCCTCAGTAATATGCTCTACTCACAAAAGTGGAAGGAAGAGCAGAGTGTTGAAGCTGGTTTTAGGTTTCGTTGCTACTGGATTTGCACTACCTCTAATCGCCGTTATCATATGCCGTAACAAAGCCAGGATTTGGAGATTTATATTAATACAAGTTGGTAAAATAAAAAGGAATGATCGAGTTATAGAAGCCTTCCTTGAAAGCCAAGGTTCTCTGGGTCTAAAAAGATACAGTTTCTCCGATGTAAAGAAAATAACCAACTCCTTCAAAATTAAAGTGGGAGAAGGTGGTTATGGCTCTGTATACAAAGGAAAATTGGTGAATGGTTGCTCAGTGGCAGTGAAGATACTGAACGAGTCAAAAGAGAACGGCGAAGAGTTTATCAACGAGGTTGCTAGCATAAGCAAAACATCCCATGTCAACATTGTCTCTCTCCTTGGATTTTGTCTAGATGGAAGCAGAAAAGCCCTCGTCTATGAGTTTATGTCCAATGGTTCACTTGAAAAGTACATTCAGAAGAAGGCATCTGAAACTAAAACTAATACAAACCCGTCCTTGAGTTGGGAGAAACTGCACCAGATTTCAATAGGCATAGCACGAGGACTCGAGTACTTGCACAAAGGATGCAACACTCGGATTCTGCATTTTGACATTAAGCCACACAACATTCTTTTGGATGAAGCGTATCGTCCAAAGATATCAGATTTTGGGCTTGCTAAGCTAAGCACGAGAGATGAAAGCATAGTTTCAATGTCAAATGCTAGAGGGACAGTAGGGTACGTGGCTCCCGAAGTGTTCAGTAAAAGCTTTGGAGGTGTTTCACACAAGTCTGATGTTTACAGCTATGGAATGATGCTGCTGGAAATGGTTGGAGGGCAGAAGAACATCATAAACGTTGAAGAAGAAGCTAGTCGCTCAAGCGAGTTATATTTCCCGCAATTGGTTATTTATAAGAAGCTTGAGCAGGGGAATGATTTGGGAGTTGATGGAATATTGTCAGGGGAAGAAAATGAGATGGCCAAGAGAATGACTATGGTGGGTTTGTGGTGCATTCAGACAATTCCTTCACATAGACCTACCATAACTAGAGTCATTGACATGTTGGAAGCTACCGTGGATTCCTTGCAAATGCCACCAAAACCTTTCCTCACTTCTCCTCCAAGATCAACAACCACTCATTTTTCTGATGCAGGATTTCAAACATAG 2085 0.4321 MTQSIQYNRVLFFCCFALISFYKAITSHLNKNMRGFAIQIPPTYVTMTTRSSSFLAASMLTLCFFLTILPQSYSQQNDTNNYSICSQAFSCGTLTNVSYPFWGGNRPQFCGRNGFKLTCMHNQNTTTSLQVGPQKFNVLDINQTASTLRMVRTDLVYDRCSSNFTNTSLSATPFTFLPTVQNVTIFYECPSENSLAAVGNTFACQNDTNKHAFYVVNGTQLEQFPDLHKCAVSVQVQVSEGGVGALLDQGFDVRYEYDAELSSQCTACRDSGGACGTNENDSAHFSCYCSAGGASVICSTHKSGRKSRVLKLVLGFVATGFALPLIAVIICRNKARIWRFILIQVGKIKRNDRVIEAFLESQGSLGLKRYSFSDVKKITNSFKIKVGEGGYGSVYKGKLVNGCSVAVKILNESKENGEEFINEVASISKTSHVNIVSLLGFCLDGSRKALVYEFMSNGSLEKYIQKKASETKTNTNPSLSWEKLHQISIGIARGLEYLHKGCNTRILHFDIKPHNILLDEAYRPKISDFGLAKLSTRDESIVSMSNARGTVGYVAPEVFSKSFGGVSHKSDVYSYGMMLLEMVGGQKNIINVEEEASRSSELYFPQLVIYKKLEQGNDLGVDGILSGEENEMAKRMTMVGLWCIQTIPSHRPTITRVIDMLEATVDSLQMPPKPFLTSPPRSTTTHFSDAGFQT 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2558 694 Pfam Wall-associated receptor kinase galacturonan-binding 85 151 IPR025287 GO:0030247
Aed5g2558 694 SMART serkin_6 380 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2558 694 MobiDBLite consensus disorder prediction 671 694 - -
Aed5g2558 694 Pfam Wall-associated receptor kinase C-terminal 205 291 IPR032872 -
Aed5g2558 694 ProSiteProfiles Protein kinase domain profile. 380 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2558 694 ProSitePatterns Protein kinases ATP-binding region signature. 386 408 IPR017441 GO:0005524
Aed5g2558 694 PANTHER RUST RESISTANCE KINASE LR10-RELATED 40 689 IPR045874 GO:0004672
Aed5g2558 694 Gene3D Transferase(Phosphotransferase) domain 1 455 671 - -
Aed5g2558 694 SUPERFAMILY Protein kinase-like (PK-like) 361 662 IPR011009 -
Aed5g2558 694 Pfam Protein kinase domain 385 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2558 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 506 518 IPR008271 GO:0004672|GO:0006468
Aed5g2558 694 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 40 689 - -
Aed5g2558 694 MobiDBLite consensus disorder prediction 679 694 - -
Aed5g2558 694 Gene3D Phosphorylase Kinase; domain 1 357 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2558 Aed-Chr5 26444872 26456522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2558 61 689 Receptor kinase-like Gene Family AT5G38260 38.863 3.04e-142 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Aed5g2558 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2558 - - gmx:100816285 1082.01