Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2555 ATGGCGACGCCGTTGGACGGAGGAGGAGTGGCGGTGCTCCCGAATTCCGTCAACAAGGTTGACTCCTCCTCCTCGCCTCTCAATGGCGGCTTGCGTTGCTCCAAACCGGAGTCGCCAATTTTGATTTTCTTGTTCTTTCACAAAGCGTTTCGGAATGAGCTTGACGCGCTGCACCGATTGGCTATCGCATTCGCCACCGGCAACCGCTCCGATATTAAACCGCTCTCCGACCGCTATCATTTCCTCAGCTCCATTTACAGGCACCACTCCAATGCTGAAGACGAGGTGATTTTTCCAGCTCTAGATATACGGGTGAAGAATGTAGCACAGGCATATTCTCTTGAGCACAAGGGTGAAAGCAACCTTTTTTATCATCTATTTGATCTTTTAACTTCTTCCATCAATAATGATGAAAGTTTTCCAAGAGAGTTGGCATCCTGCACAGAAGCTTTGCAGACGTCAGTTAGTCAACACATGGCGAAGGAAGAGGAGCAGGTATTTCCTCTGCTTATTGAGAAGTTCTCTCTTGAGGAACAGGCATCCTTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTGAATATGATGGCTGAATTTCTACCGTGGCTTTCAACATCTATATCACCTGATGAATCTCAGGATTTGCGAAATTGCTTAATCAAGATAGTGCCACAGGAAAAGCTCCTTCAGAAGGTTGTTTTCACCTGGATGGAAAGCACAGTTGAAACTTGTGTAGATCATTCTCAAGTTCAATCTAGTTCTAGGTCATTAACCCATCAGTTTGAGAAAGTAAACTGTGCTTGTGAATCCACAACAACTGGAAAAAGGAAACATTCTGGATCTATGATAGACGTTTCTGATACCAGTGGACCACATCCTATAGATGAAATATTGCTCTGGCATAATGCAATAAAAAAAGAGTTAAGTGAGATAGCAGTGGAGGCCAGAAAGATACAACACTCAGGAGATTTTACTAATCTATCTGCTTTTAACGAAAGATTTCAATTCATAGCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAGAATTCTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGGCGTTTGATTGAAAGTATTCAAAGTGAAGGAGCATCATCTAATTCAGATGTTGAATTTTATTCCAAGTTATGCACACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAGAAGGCAATGTGAACTTCTGTATCAAAGCTTATGCATGATGCCTCTGAAATTGATTGAGCGTGTCCTGCCATGGTTGGTAGGATCTTTAACTGAAAATGAAGCAAAGATGTTTCAGAAAAATATGCAGTTGGCAGCTCCAGCAACAGATTCTGCTCTTGTCACACTCTTCTGTGGATGGGCTTGCAAGGCTCGTAATGAAGGTCTGTGTTTGTCTTCTGGTGCATCAGGTTGCTGTCCTGCTCAAAGACTTTCTGATATTGAAGAAAATATTGGTCGGCCATCCTGTGCTTGTGCATCTGCATTATCTAATAGACATTGCTCAGTATTAGCTGAATCAGGTGGGAACAAAAGACCAGTCAAGCGAAATATATTGGAGTTGCACAAAAATGCAGATCTACCTGAAACTTCAGAGACTGAAAGTATTCAGAAAGAATGTTGTAGTGCACTGTCTTGTTGTGTGCCAGGTTTGGGAGTAAGTAGTAATAATTTAGGGCTGAGTTCTCTTTCGACAGGCAAGTCCTTACGGTCCTTGTCTTTCAGCTCTTCTGCCCCATCTCTTAATTCCAGTCTTTTCATATGGGAAACAGAGAGCAGCTCATGCAATGTTGGATCTACACAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGCTGAGCGATGGTGATGAGACAATTGTCCGGCAATTTAATGGAAGATTTCGTCTTTTGTGGGGTTTGTATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCAGCTTTAGAATCCAAAGAGGCACTTCATAATGTGAGTCATTCGTACATGCTGGACCATAAGCAGGAAGAACAACTGTTTGAAGATATTTCCTGTGTTCTTTCAGAGTTTTCTGTCCTTCATGAAGCCTTGTTGATAACCCATATGTCAGACAATTTAAACGGAGGTAATTTTGGAACCTCTGATGCCAATACTAGTGATGATATCAAAAAATATAATGAACTTGCTACTAAGCTTCAGGGGATGTGCAAATCCATTAGAGTGACTCTGGATCAGCATCTTTTCAGAGAAGAATGCGAACTGTGGCCCTTGTTTGGGAGACATTTCACTGTGGAAGAACAAGACAAGATAGTAGGTCGGATAATTGGAACAACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACGTCTGCGCTTACTCAGGATGAACAGAACAAAATGATGGATACATGGAAGCAGGCAACTAAGAACACTATGTTCAATGAATGGCTTAGTGAATGCTGGAAAGAGAGTCCAGTGTCTATGTCACAGACAGAAACATCAGATCATAGCACTTCTGGGAGAGGTGCTGAATATCAAGAAAGCTTGGACCACAATGATCAGATGTTCAAGCCAGGTTGGAAAGACATATTTCGGATGAATCAAAGTGAACTTGAGTCAGAGATCCGCAAGGTATATCGAGACTCAACTCTTGATCCAAGGAGAAAAGCATATCTTGTGCAGAATCTACTGACAAGTCGATGGATAGCTGCCCAGCAGAAATCACCTAAAGCTCTCTCTGAAGGATCATCTAACAGAGTAGAAATAGAAGGACTCTCACCATCATTCCGGGACCTAGAGAAACATGTATTTGGGTGTGAGCACTATAAGAGAAATTGCAAGCTTCAAGCTGCATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTCAGCGATCACTCTATGGATAGGAAAGCAACATCGGAAATGATGTGTATGTGCTGCCTGAATATACAGCCAATAGGTCCCATATGCATGACACCTTCATGTAATGGATTTTCGATGGCAAAGTACTATTGCAATATATGCAAATTTTTTGATGATGAAAGGAATGTATATCATTGCCCATTTTGCAATTTATGCCGTGTTGGGCGAGGGCTTGGGATTGATTATTTTCATTGCATGAAATGCAATTGTTGCCTGGGGATTAAATCAGCGTCTCATAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGTTGTGATGACTTGTTCACTTCAAGTGCCACGGTCAGAGCTCTACCCTGTGGCCACTATATGCATTCTGCTTGCTTCCAGGCATACACGTGTAGTCACTACACATGTCCAATCTGCAGTAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCCTATTGGCTGCTGAGGAGCTTCCTGAAGAGTATCAGGAGCGGACATACTCTGCCATGACTGTGATCGGAAGGGCACTTCACGGTTCCACTGGTTGTATCACAAATGTGGATTTTGTGGCTCTTACAATACCCGGGTTATCAAGTGTGAGACGTCAAACTCCAGCTGCTCTTAGTGTGCAGTTTGTAAATACTACTGTACTTGTATAG 3726 0.4187 MATPLDGGGVAVLPNSVNKVDSSSSPLNGGLRCSKPESPILIFLFFHKAFRNELDALHRLAIAFATGNRSDIKPLSDRYHFLSSIYRHHSNAEDEVIFPALDIRVKNVAQAYSLEHKGESNLFYHLFDLLTSSINNDESFPRELASCTEALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRNCLIKIVPQEKLLQKVVFTWMESTVETCVDHSQVQSSSRSLTHQFEKVNCACESTTTGKRKHSGSMIDVSDTSGPHPIDEILLWHNAIKKELSEIAVEARKIQHSGDFTNLSAFNERFQFIAEVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRRLIESIQSEGASSNSDVEFYSKLCTHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVGSLTENEAKMFQKNMQLAAPATDSALVTLFCGWACKARNEGLCLSSGASGCCPAQRLSDIEENIGRPSCACASALSNRHCSVLAESGGNKRPVKRNILELHKNADLPETSETESIQKECCSALSCCVPGLGVSSNNLGLSSLSTGKSLRSLSFSSSAPSLNSSLFIWETESSSCNVGSTQRPIDTIFKFHKAIRKDLEYLDVESGKLSDGDETIVRQFNGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSEFSVLHEALLITHMSDNLNGGNFGTSDANTSDDIKKYNELATKLQGMCKSIRVTLDQHLFREECELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLSECWKESPVSMSQTETSDHSTSGRGAEYQESLDHNDQMFKPGWKDIFRMNQSELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKSPKALSEGSSNRVEIEGLSPSFRDLEKHVFGCEHYKRNCKLQAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMCCLNIQPIGPICMTPSCNGFSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYQERTYSAMTVIGRALHGSTGCITNVDFVALTIPGLSSVRRQTPAALSVQFVNTTVLV 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2555 1241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1111 1205 IPR013083 -
Aed5g2555 1241 SMART ring_2 1116 1157 IPR001841 -
Aed5g2555 1241 Pfam CHY zinc finger 987 1062 IPR008913 GO:0008270
Aed5g2555 1241 SUPERFAMILY RING/U-box 1113 1168 - -
Aed5g2555 1241 CDD Hr-like 294 423 - -
Aed5g2555 1241 CDD Hr-like 642 802 - -
Aed5g2555 1241 ProSiteProfiles Zinc finger CHY-type profile. 980 1049 IPR008913 GO:0008270
Aed5g2555 1241 Pfam Ring finger domain 1115 1157 IPR001841 -
Aed5g2555 1241 Pfam Hemerythrin HHE cation binding domain 44 170 IPR012312 -
Aed5g2555 1241 Pfam Hemerythrin HHE cation binding domain 291 425 IPR012312 -
Aed5g2555 1241 Pfam Hemerythrin HHE cation binding domain 640 803 IPR012312 -
Aed5g2555 1241 SUPERFAMILY CHY zinc finger-like 980 1043 IPR037274 GO:0008270
Aed5g2555 1241 CDD Hr-like 42 168 - -
Aed5g2555 1241 PANTHER CHY ZINC FINGER PROTEIN 24 1189 - -
Aed5g2555 1241 ProSiteProfiles Zinc finger CTCHY-type profile. 1052 1115 IPR017921 -
Aed5g2555 1241 Gene3D nmb1532 protein domain like 636 879 - -
Aed5g2555 1241 SUPERFAMILY Zinc hairpin stack 1053 1109 IPR037275 -
Aed5g2555 1241 Gene3D nmb1532 protein domain like 37 188 - -
Aed5g2555 1241 Gene3D nmb1532 protein domain like 290 441 - -
Aed5g2555 1241 ProSiteProfiles Zinc finger RING-type profile. 1116 1158 IPR001841 -
Aed5g2555 1241 CDD RING-H2_Pirh2 1115 1158 - -
Aed5g2555 1241 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 24 1189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2555 Aed-Chr5 26418322 26428386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2555 1 1187 C2H2 Transcription Factor Family AT3G18290 66.391 0.0 1590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2555 K16276 - gmx:100801725 2242.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0221 7 1569913 1579155 Aed5g2555 5 26418322 26428386 ECH
Aed5g2555 5 26418322 26428386 Aed5g2555 5 26418322 26428386 ECH
Aed5g2555 5 26418322 26428386 Aed7g0221 7 1569913 1579155 PCT