Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2552 ACAAACCCTAGGTTTTCATTTCACTGCGAAATCAGCAAGGACTCCCATTCCTTCTATTTGCCGCAGATCTCTCATTCTCAGGGCTTGCATCTTCCCAGGCAAGTTTTGAAGATGTACACATCAAGGAAGAAAATCCACAAGGACAAGGATGCTGAGCCAACTGAGTTTGAAGAGTCGGTTGGACAGGCACTGTTTGATCTGGAAAATACCAATCAGGAGCTTAAAAGTGAACTGAAGGATCTATACATAAACTCAGCAGTGCAGGTTGATGTTTCTGGGAACCGCAAGGCTGTTGTTATTCATGTCCCATACAGATTAAGGAAAGGTTTCCGTAAGATCCATGTTAGGCTTGTCAGGGAGCTTGAGAAGAAGTTTAGTGGCAAGGATGTAATCTTGGTTGCCACCCGGAGGATTGTGAGGCCACCTAAGAAGGGTTCTGCTGCTCAGCGTCCACGCAGCCGTACCCTTACTGCTGTTCATGAAGCAATGCTGGAAGATGTTGTATTGCCTGCTGAGATTGTTGGGAAGCGTGTGAGGTACAGAATTGATGGATCCAAGATTATGAAGGTATACTTGGACCCAAAGGAGCGAAACAACACTGAGTACAAGTTGGAGACTTTTGCTGCAGTGTACAGGAAGCTATCCGGCAAAGATGTTGTGTTTGAGTATCCTGTAACAGAGGCTTAG 687 0.4571 TNPRFSFHCEISKDSHSFYLPQISHSQGLHLPRQVLKMYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNQELKSELKDLYINSAVQVDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILVATRRIVRPPKKGSAAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRVRYRIDGSKIMKVYLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPVTEA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2552 228 Coils Coil 64 84 - -
Aed5g2552 228 Pfam Ribosomal protein S7e 44 223 IPR000554 GO:0003735|GO:0005840|GO:0006412
Aed5g2552 228 PANTHER 40S RIBOSOMAL PROTEIN S7 24 228 - -
Aed5g2552 228 PANTHER 40S RIBOSOMAL PROTEIN S7 24 228 IPR000554 GO:0003735|GO:0005840|GO:0006412
Aed5g2552 228 ProSitePatterns Ribosomal protein S7e signature. 116 129 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2552 Aed-Chr5 26400941 26403010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2552 38 228 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 79.058 7.03e-115 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2552 K02993 - gmx:100527680 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0215 7 1537458 1538722 Aed5g2552 5 26400941 26403010 ECH
Aed5g2552 5 26400941 26403010 Aed5g2552 5 26400941 26403010 ECH