Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2551 ATGTCTTCTTCAAAGAGTGTCAGCAGTAGTTCTAGTGAAGATGACATTAATGAACTTAGAAGAGGGCCTTGGACTCTTGAAGAGGATAATTTGCTCTCCCAATACATTTCTAATCATGGGGAAGGCCGATGGAATTTGCTGGCTAAACGTTCAGGATTGAAGAGAACTGGGAAAAGTTGCAGATTAAGGTGGTCAAAAATTGCACAAAATTTGCCAGGAAGAACAGACAATGAAATAAAGAACTATTGGAGAACTAGGATTCAGAAACAAGCAAGACATTTGAAAATTGACACTGACAGCAGAGAGTTTCAAGAACTTGTTAGGCGTTTCTGGATGCCAAGATTGCTTCAGAAAGCCAAAGAATCATCAACATCAACATCTTCTTCAGCCATGTCAATTCAAAACCAGGCAATTCCTATGCCTCATGTTGGTGTTTCTCAGCATTCAACTGTTGGGACCATAATAGCATCACATTCACACCCCCCTTGTATGATGAATGAAGCTGGTCCCACATCGCAGAACTCAGACTCTGAACACAACACCTTGTCTGAGTCAGCAAAAGTGCCTCAGCATTTTGGACACTCCACCATCACCCAATTTCATCATGCCTTGAATAACAATGACTTTGGCACCTTCACATATGACGCTTACAATGTCTATGGGTATGGGGTGCCTGAGGATTCGCAGTACCCAATTGGTGATTATCAAATGGTAGGAGTAGGAGACAACGATTTTGCATGTAACATGTGGAACATGGATGAACTGTGCCAATTTACCAAGTTACAAAAATAA 792 0.4129 MSSSKSVSSSSSEDDINELRRGPWTLEEDNLLSQYISNHGEGRWNLLAKRSGLKRTGKSCRLRWSKIAQNLPGRTDNEIKNYWRTRIQKQARHLKIDTDSREFQELVRRFWMPRLLQKAKESSTSTSSSAMSIQNQAIPMPHVGVSQHSTVGTIIASHSHPPCMMNEAGPTSQNSDSEHNTLSESAKVPQHFGHSTITQFHHALNNNDFGTFTYDAYNVYGYGVPEDSQYPIGDYQMVGVGDNDFACNMWNMDELCQFTKLQK 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2551 263 SUPERFAMILY Homeodomain-like 19 83 IPR009057 -
Aed5g2551 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 72 IPR017930 -
Aed5g2551 263 CDD SANT 23 85 IPR001005 -
Aed5g2551 263 Gene3D - 64 90 - -
Aed5g2551 263 SMART sant 20 89 IPR001005 -
Aed5g2551 263 Gene3D - 21 63 - -
Aed5g2551 263 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 8 64 - -
Aed5g2551 263 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 8 64 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aed5g2551 263 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Aed5g2551 263 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 63 256 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aed5g2551 263 Pfam Myb-like DNA-binding domain 21 65 IPR001005 -
Aed5g2551 263 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 63 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2551 Aed-Chr5 26396901 26398512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2551 18 258 MYB Transcription Factor Family AT1G68320 37.676 1.18e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed5g2551 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2551 K09422 - gmx:778042 379.793