Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2550 ATGGCTGAATTCACCCAAGATTTGCAAAGTCTTAGATTTCCTTTCTTAGATATTGAGAACATGGAATTGCAGAATTTTATGCCTTTCTCCTGTGACAGCAACTTCTTAGGCTATCCAGAAGCTGAATTTCCAGGAAACTTTGAAGAAAAATTTCAATGTGTTGATCACAATGCAGTTCCTATTAATTCAGTTAAAAATGAAATCCATGAAGGTAAAAAGAGGATGGCAACTGATATATGTGAGCCAAGTTCTGCAAATTCAACTCCTGCTGTTTCTGAGAGTGGAAGCAAGACAAAAAATAGTTCTGGAAGAGGAAAGAGAGTAAAAAGGAATATGATACAAGACGAGAAAGCAAATGATCAAGTAGTTCATGTTAGAGCCAAACGAGGTCAAGCTACAGATAGTCATAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAAAAACTTAGGTGCTTGCAGAACATTGTACCAGGATGTTATAAGACCATGGGTATGGCCATAATGTTGGATGAAATAATAAACTATGTCCAGTCCTTGCAGCATCAAGTGGAGTTCCTCTCTATGAAGCTTACTGCAGCAAGTGCCTATTATGACTTCAATTCAGAGTCAGATGCTTTAGAAACAATGCAGGTTCATTCTGTGTGGTGA 654 0.3777 MAEFTQDLQSLRFPFLDIENMELQNFMPFSCDSNFLGYPEAEFPGNFEEKFQCVDHNAVPINSVKNEIHEGKKRMATDICEPSSANSTPAVSESGSKTKNSSGRGKRVKRNMIQDEKANDQVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAASAYYDFNSESDALETMQVHSVW 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2550 217 MobiDBLite consensus disorder prediction 80 101 - -
Aed5g2550 217 Gene3D - 127 200 IPR036638 GO:0046983
Aed5g2550 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 199 IPR036638 GO:0046983
Aed5g2550 217 Pfam Helix-loop-helix DNA-binding domain 135 182 IPR011598 GO:0046983
Aed5g2550 217 CDD bHLH_AtBPE_like 122 206 - -
Aed5g2550 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 181 IPR011598 GO:0046983
Aed5g2550 217 SMART finulus 137 187 IPR011598 GO:0046983
Aed5g2550 217 MobiDBLite consensus disorder prediction 73 115 - -
Aed5g2550 217 PANTHER TRANSCRIPTION FACTOR BEE 1 14 212 - -
Aed5g2550 217 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 14 212 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2550 Aed-Chr5 26389255 26390961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2550 79 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 68.382 1.83e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed5g2550 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2550 - - gmx:100777160 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g0214 7 1526101 1527628 Aed5g2550 5 26389255 26390961 ECH
Aed5g2550 5 26389255 26390961 Aed5g2550 5 26389255 26390961 ECH