Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2545 ATGGAAGCAGAAAAGCAGCAGCTACCTCCTGGATTCAGGTTCCATCCCACAGACGAAGAACTCATCACATATTATTTACTAAGGAAAGTGTCTGATATTGATATTGGCTTCACACCCAAAGCTGTAGCAGTTGTTGATCTCAATAAATCTGAACCTTGGGACCTCCCAGAATGGGTGATTTGCAGAGTATTCGAAAAGAGCTCAGCACCGAAGAAACCACAGCAGACATCATCCTCCCAACCATCTCAAGAGTCCCCTAACTCAATGGTCAACGAATTTGGTGATGTTGACCTACCAAATCTAAATAGCGTTGCAAATTCATCTAGTAGCTTCACCACCAATATGAATTGGCCTTCTGGATTGCTGATGAATCCAAACCTTTCTGTGAATTCCTTGCTTCTCAAGGCACTGCATCTTAGGAATACTTACGTTCCTCCTCAAGGATTAGGATTTTCTCACAATAATATTAATATTATGGGAACTGATCATGATCATCAACTCACTGCTTCTTCTTCTTCCAAAGCTTGTGTCCCGCAGCAGGAGCAACCATTCAATATGGACTCCATTTGGTGA 573 0.4223 MEAEKQQLPPGFRFHPTDEELITYYLLRKVSDIDIGFTPKAVAVVDLNKSEPWDLPEWVICRVFEKSSAPKKPQQTSSSQPSQESPNSMVNEFGDVDLPNLNSVANSSSSFTTNMNWPSGLLMNPNLSVNSLLLKALHLRNTYVPPQGLGFSHNNINIMGTDHDHQLTASSSSKACVPQQEQPFNMDSIW 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2545 190 Pfam No apical meristem (NAM) protein 9 57 IPR003441 GO:0003677|GO:0006355
Aed5g2545 190 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 57 - -
Aed5g2545 190 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 57 108 - -
Aed5g2545 190 MobiDBLite consensus disorder prediction 69 90 - -
Aed5g2545 190 Gene3D NAC domain 17 57 IPR036093 GO:0003677|GO:0006355
Aed5g2545 190 SUPERFAMILY NAC domain 5 59 IPR036093 GO:0003677|GO:0006355
Aed5g2545 190 PANTHER BNACNNG63190D PROTEIN 6 57 - -
Aed5g2545 190 MobiDBLite consensus disorder prediction 69 96 - -
Aed5g2545 190 ProSiteProfiles NAC domain profile. 8 190 IPR003441 GO:0003677|GO:0006355
Aed5g2545 190 PANTHER BNACNNG63190D PROTEIN 57 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2545 Aed-Chr5 26366395 26367892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2545 5 56 NAC Transcription Factor Family AT3G18400 78.846 1.37e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed5g2545 NAM 4.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2545 - - gmx:100775645 157.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2545 5 26366395 26367892 Aed7g0203 7 1438904 1441201 PCT