Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2542 ATGAATTCCACGCCTGGTGACAACAATTCAGAACCTAGAGAGAAGGTCTGTCCAGATGCTAGTTCCAATGGAAATGGGAAATTTCTATCCTTCAATGGTGATGTGGAAGCCAAACATCGATTGCTTTTGGTTCAGTGGTTAACTAGTCTTGGTCTTGTCCCTGTATTGAGCCTTCCAATAAATGTCACGGATGGTGAATTAAGAGCATGCTTAAGCAATGGTACAGTTTTGTGCCAGATACTGAACAAGCTACGACCTGGTACCGTTAATGTGGTTAGTGAACCTGATAATTTTCTGCCATCACAATCAGAAAATGTTAAAACTTTTCTGAAAGCTTTGGACGGAATGGGATTGCCCCGGTTTGAAATATCAGACCTAGAGAAGGGGTCTATGATAGCTGTTGTGGAATGTCTTTTAACACTTAGAGAGAAAAGTTTGCAGAATGCTTTGGGAGATAATATTTCTGTAACTACTTGCAACACGGCGAGCCCTCGTGTAATTTCACCATTCAATCTTTATTGTTCTCCAACATTTGGTGTAGAGCAGAGGAATGTTTCAGCTGCGTCGTCCAAGTTGCATCGTGTTAAGAGTAGCCCAGTTATGGCAGAATCACCAGCTTCATTAATACACCATGTTGGTCATAAGTTTCATGAGGTGTTTCAACTGAATCCTGGGAGTTACGCAGATCTTCCTGCTGCAAAAATATCAGAAATGATGAACTCAAACAGTATAGATAATGCTCCCACTCAGTCGCTTCTGAGTGTTGTGAATGGTATTCTTGAAGAAAGTGTTGAAAGAAGAAATGGGGAAATACCTCATAGTGTGGCTTGCTTGTTGAAAAAGGTTACTCAAGAGATTGAGCGGCGCATGTCAACTCAAGCAGAACATTTGCGAACTCAAAACAATCTTTTCAAGGCTCGGGAAGAAAAATACCAATCGAGAATAAGAGTACTCGAGGCACTTGCAACTGAAGCTAGAGATGAGAGTGAGGTTGAGAAGATCAGAGATGAAGAAAAGAAGGTAGATGAGAAGGAAGTTGTTAGGTTGGTAAAAGAGAAGGAGGTAAAAAATTTGGAAATTTCAGCTTTGAAGGTACAACTAGAAACCGCCAAAAGAACATATGAAGTACAATTATCACAGTTTGAAAAAGAAGCCTACAGTTTTAAAGCAGAATTGAGACAGAAGGTCCGAGAATATGAGCGTCAATTGGAAGAATTAAGAAAGGAGGCTGAAAATTTCAAAGTGGAAGTAAAAACGACAGATGAAGAGGAAAGTAGTAGGTTGATGAAAGAACGGGTGGACAAAAATTTGGAAATTTCACCATTGAAGCAAGAACCGGAAACAACCAAAAAAACATATGAAGTACAACGTTCACAGTTGGAAACAGAAGCTAAAGCAGAATTAACACGAAAGTCTCAAGAATATGAGCACCGATTGGAAGAATTAAGAAATAAGTTTGAAGAACAAGCTAAGGGTGCTAAAGCAGAACTGGAACAAAAGTCTCGAGAATATGAGCATCAATTGGAAGAACTAAGAAATAAGTTTAAGGAGCTTGAGGTTTATTCTGATTCAAAAGATCAGAAGTGGAACATGAAAATGAACCAAATGCAGACTGCTATAAATTTCCAATTCAGTTCCCTACAGAAATTGAAATTATCTTCGGAATCCATTAAGCAATGTGTTATGAAAGAGCAAACGGTTTATGCAAAAGATTGTGATCGGTTAGGTGTTTATCTTAAACCACTGCTGCATGCAGCTGAGAACTACAATGCTGTTCTTGCTGAAAATCAAAAAATGTTTAATGAGATTCAAGAAATAAAAGGAAATATCAGAGTATTTTGTCGAATTAGACCATTTCTTTTGGGCAAAAAGGAAAAATACTCTATTGTTGAACTCACTGGTGAAAATGCTTTGGTGTTGGTAAATCCATCCAAAGAAGGAAAAGATGTTCGATCATTTCAATTTAACAAGATTTTTGGCACTGCCACAACTCAAGCGGAGGTATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGGTATAATGTGTGTATATTTGCTTATGGCCAAACTGGTGCCGGGAAAACTTATACAATGACTGGTCCAAATGGTGCAACAAGCGAGACTCTTGGTGTTAATTATCGAGCTCTAAATGACCTCTTCAAGATTGCCACAAGTAGATCAAACTTCATAGACTATGAGATTGGGGTTCAAATGGTTGAGATATATAATGAGCAAGTCCGTGACTTGTTAATAACATATGATGTGATTAAACTAATGGACATTGGACTTAAAAATAGAGCCATTGGTGCAACTGCTATGAATGAAAGGAGTAGTCGTTCTCACAGTGTTGTCTCAATTAATGTATGTGGGAAGGACTTGAAGACTGGTGCCACTATGGTTGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGATCGGTCTGAAGTAACTGGGGATAGGCTTAAGGAAGCACAATATATAAACAAATCACTATCTGCCCTTGGAGATGTTATTTTTGCTCTTTCTCAAAAGAGCCCTCATGTACCATACAGAAACAGCAAACTTACTCAACTTCTACAAACATCTCTTGGTGGTCAAGCAAAAACACTCATGTTTGTCCAAATCAATTCAGACGTAAGTTCATATTCTGAAACTCTGAGCACTTTAAAGTTTGCTGAGAGGGCTTCTGGAGTTGAATTAGGAGCTGCACGAAGTAGTAAAGAGGGCAAAGATGTGAGGGAATTAATGGAACAGGTGTCTTGTTTGAAGAAAATTATATTGGCAAAAGATGAGGAGATTGAGAGGCTTCAATTACCTCGAGTTTCATTTAAGCGAAACCAAATACCACGAAGTAGAAGTAATAAGCACTATGAAGCTGATCCTAACCAGCAACCAATGGATGATCATATACACCGAAATGAATTTCTCCATCAATCTTCTGAACTTAGTAGTTTAGGAAAGAATATTGCTACAATTCCAGAAACATCGGGATATACAGATTCTGATTTTGATGGAAGATCAAGTGATATTTCTGACAGTGGTGTTGCTCCAGGCACTGAAACTGATTGTTCTGAAAATTCCAGTCTCACCGACGGCTCTAAACCATTAGATAAGAGATCTAAAGCAATTCGGAAAACTGTTCAAGTGATGAGGAAATTAACCCGAACTTCATCTGTCTCGACCACCCCAGTAAAGATCCCCTCCAAGAAGTCACCAGGTATGAAAAAAAGCGTCAGTATAGGCAACCTTAAACCTTCAAAACTGTGGAAGTAA 3291 0.3859 MNSTPGDNNSEPREKVCPDASSNGNGKFLSFNGDVEAKHRLLLVQWLTSLGLVPVLSLPINVTDGELRACLSNGTVLCQILNKLRPGTVNVVSEPDNFLPSQSENVKTFLKALDGMGLPRFEISDLEKGSMIAVVECLLTLREKSLQNALGDNISVTTCNTASPRVISPFNLYCSPTFGVEQRNVSAASSKLHRVKSSPVMAESPASLIHHVGHKFHEVFQLNPGSYADLPAAKISEMMNSNSIDNAPTQSLLSVVNGILEESVERRNGEIPHSVACLLKKVTQEIERRMSTQAEHLRTQNNLFKAREEKYQSRIRVLEALATEARDESEVEKIRDEEKKVDEKEVVRLVKEKEVKNLEISALKVQLETAKRTYEVQLSQFEKEAYSFKAELRQKVREYERQLEELRKEAENFKVEVKTTDEEESSRLMKERVDKNLEISPLKQEPETTKKTYEVQRSQLETEAKAELTRKSQEYEHRLEELRNKFEEQAKGAKAELEQKSREYEHQLEELRNKFKELEVYSDSKDQKWNMKMNQMQTAINFQFSSLQKLKLSSESIKQCVMKEQTVYAKDCDRLGVYLKPLLHAAENYNAVLAENQKMFNEIQEIKGNIRVFCRIRPFLLGKKEKYSIVELTGENALVLVNPSKEGKDVRSFQFNKIFGTATTQAEVYSDIQSFIRSVLDGYNVCIFAYGQTGAGKTYTMTGPNGATSETLGVNYRALNDLFKIATSRSNFIDYEIGVQMVEIYNEQVRDLLITYDVIKLMDIGLKNRAIGATAMNERSSRSHSVVSINVCGKDLKTGATMVGNLHLVDLAGSERVDRSEVTGDRLKEAQYINKSLSALGDVIFALSQKSPHVPYRNSKLTQLLQTSLGGQAKTLMFVQINSDVSSYSETLSTLKFAERASGVELGAARSSKEGKDVRELMEQVSCLKKIILAKDEEIERLQLPRVSFKRNQIPRSRSNKHYEADPNQQPMDDHIHRNEFLHQSSELSSLGKNIATIPETSGYTDSDFDGRSSDISDSGVAPGTETDCSENSSLTDGSKPLDKRSKAIRKTVQVMRKLTRTSSVSTTPVKIPSKKSPGMKKSVSIGNLKPSKLWK 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2542 1096 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 3 344 - -
Aed5g2542 1096 SMART kinesin_4 607 912 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Aed5g2542 1096 Coils Coil 389 423 - -
Aed5g2542 1096 Gene3D Kinesin motor domain 756 944 IPR036961 -
Aed5g2542 1096 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 757 1096 - -
Aed5g2542 1096 Pfam Microtubule binding 596 753 IPR031852 GO:0008017
Aed5g2542 1096 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 941 IPR027417 -
Aed5g2542 1096 SUPERFAMILY Calponin-homology domain, CH-domain 39 142 IPR036872 -
Aed5g2542 1096 PANTHER KINESIN-LIKE PROTEIN KLP-3 3 344 - -
Aed5g2542 1096 ProSiteProfiles Kinesin motor domain profile. 609 904 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Aed5g2542 1096 MobiDBLite consensus disorder prediction 999 1096 - -
Aed5g2542 1096 PANTHER KINESIN-LIKE PROTEIN KLP-3 354 414 - -
Aed5g2542 1096 MobiDBLite consensus disorder prediction 1 21 - -
Aed5g2542 1096 MobiDBLite consensus disorder prediction 957 974 - -
Aed5g2542 1096 Gene3D - 420 461 - -
Aed5g2542 1096 Gene3D - 342 382 - -
Aed5g2542 1096 PANTHER KINESIN-LIKE PROTEIN KLP-3 757 1096 - -
Aed5g2542 1096 Coils Coil 465 521 - -
Aed5g2542 1096 Pfam Calponin homology (CH) domain 65 143 IPR001715 GO:0005515
Aed5g2542 1096 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 429 488 - -
Aed5g2542 1096 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 354 414 - -
Aed5g2542 1096 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 484 755 - -
Aed5g2542 1096 Pfam Kinesin motor domain 757 902 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Aed5g2542 1096 Gene3D Kinesin motor domain 555 755 IPR036961 -
Aed5g2542 1096 PANTHER KINESIN-LIKE PROTEIN KLP-3 429 488 - -
Aed5g2542 1096 PANTHER KINESIN-LIKE PROTEIN KLP-3 484 755 - -
Aed5g2542 1096 Coils Coil 364 384 - -
Aed5g2542 1096 Gene3D - 32 147 IPR036872 -
Aed5g2542 1096 Coils Coil 308 328 - -
Aed5g2542 1096 MobiDBLite consensus disorder prediction 1018 1037 - -
Aed5g2542 1096 MobiDBLite consensus disorder prediction 1056 1073 - -
Aed5g2542 1096 PRINTS Kinesin heavy chain signature 682 703 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Aed5g2542 1096 PRINTS Kinesin heavy chain signature 774 791 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Aed5g2542 1096 PRINTS Kinesin heavy chain signature 805 823 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Aed5g2542 1096 PRINTS Kinesin heavy chain signature 854 875 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Aed5g2542 1096 MobiDBLite consensus disorder prediction 952 974 - -
Aed5g2542 1096 ProSiteProfiles Calponin homology (CH) domain profile. 37 146 IPR001715 GO:0005515
Aed5g2542 1096 SMART ch_5 39 141 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2542 Aed-Chr5 26347904 26354445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2542 597 904 Calmodulin-binding Proteins AT5G65930 38.053 3.24e-61 227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2542 5 26347904 26354445 Aed5g2542 5 26347904 26354445 ECH
Aed5g2542 5 26347904 26354445 Aed7g0200 7 1415585 1421022 PCT