Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2540 ATGATGAGAGACATGAAAGACGCGGGTGCCTTGGGAGCCAAGACAGCACGAGCCTGCGATAGCTGCGTAAGCAGAAGGGCGAGGTGGTTCTGTGCAGCTGATGATGCTTTTCTCTGCCATGGCTGCGACTCTTTGGTTCATTCCGCGAACCAGTTAGCAAGCAGACACGAAAGGGTTCGCCTTCAAACTGCATCCTCTAAGGTAACCAACACCACCACCGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCTCGTCACAACAACAGCAAGCACTTTGCACTTCAACAACGCCTCAAAGACGAAGTGCTCTTCAACAACAGCAGCGTTCTTCCCCTCGTGCCGGAGCTCGGAGGGGAAGAAGAACAAGAACCGGTGGTGGAGCAGATGCTGTGTCGCGTGCCCGTCTTCGACTCTTTTGATATTGATATTGATGTTGTGAGAACAACCACCGATGACTTGGACAGTTTTTCTAACATGGATTTCGCTGAGTTTGCTGCTGATGTTGAAAGCCTACTTGATAAAGAAGACGGTGAAGGGGGGGAAATGGCGAAGGTTAAGGTTAAGGATGAAGAGGAAATTGATGGTGATGTAGCGTGTTATCTGGAGTCGGTTTTTGACATGACCAATGATGATGCCTTTCATTGGAATAACATCGAGTCTGTGCTGACGTCAGATGCACCGGGGGAAGAAGTAGAGAAGGAGATGATGAGTACTGTGGTGGCGTGTGATGATGGTGATGAGGAAGCTGGGGGAACCAAGAGAGACATATTTTTGAGACTAAACTATGATGATGTTATTACTACTTGGTCCTCTACCCAAGCTTCTTCTCCATGGACTACTTCAAACCCACCTAAGTTCAACTCTGATTACGACTTCTCCTTGGGTTTGAGTGGAGTAGATGGAGAAGTAAGAAGCTTAAGGGGACACCTAGATGGAGGAAGAGAAGCAAGAGTGTCGAGGTATAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAGATAAGATATGAAGTAAGGAAGTTGAACGCAGAGAAAAGGCCTAGAATGAAAGGTCGTTTCGTCAAGAGGACAAGCTTTGTTGGAGCCAATGCTTTTCCTTCTTACCACTGA 1116 0.4767 MMRDMKDAGALGAKTARACDSCVSRRARWFCAADDAFLCHGCDSLVHSANQLASRHERVRLQTASSKVTNTTTAWHSGFTRKARTPRHNNSKHFALQQRLKDEVLFNNSSVLPLVPELGGEEEQEPVVEQMLCRVPVFDSFDIDIDVVRTTTDDLDSFSNMDFAEFAADVESLLDKEDGEGGEMAKVKVKDEEEIDGDVACYLESVFDMTNDDAFHWNNIESVLTSDAPGEEVEKEMMSTVVACDDGDEEAGGTKRDIFLRLNYDDVITTWSSTQASSPWTTSNPPKFNSDYDFSLGLSGVDGEVRSLRGHLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSFVGANAFPSYH 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2540 371 CDD Bbox1_BBX-like 18 61 - -
Aed5g2540 371 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Aed5g2540 371 ProSiteProfiles CCT domain profile. 316 358 IPR010402 GO:0005515
Aed5g2540 371 SMART bboxneu5 14 61 IPR000315 GO:0008270
Aed5g2540 371 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 364 - -
Aed5g2540 371 Pfam CCT motif 316 358 IPR010402 GO:0005515
Aed5g2540 371 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Aed5g2540 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2540 Aed-Chr5 26338429 26339800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2540 1 358 C2C2-CO-like Transcription Factor Family AT1G25440 41.981 3.00e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aed5g2540 zf-B_box 6.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2540 - - gmx:100793296 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2540 5 26338429 26339800 Aed7g0197 7 1381771 1383489 PCT