Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2538 ATGAAGACTCCGAAACGACGTTGTTTAGAGATACCGAATCCAAAGTTTAGAGATACAAAGGGAAAGGGAAAGGCAAAGGCAAAGTGTAAAGTACAATGTCCCCTCCCTGCAAGTGCAAGTGCAAGTGCAAGTGCAGGCCATGAAGGAAAGTCAAAACGCAGGCCATCGAGTTCATTTAAAGGTGTTAGACTTAGACAGTGGGGAAGATATGCGGCTGAGATTCGAAACCCACTTCAGAAGAAGAATCGTGTCTGGCTTGGTACATTTGACACTGAGCTTCAGGCCGCAGCTGCTTATTGTCAAAAGAAGCAAGACTTTGCCGCGCAAATGTTGGCTCTACAAAATCAAAATGGCAACGCCAAACAAGATTAA 372 0.4489 MKTPKRRCLEIPNPKFRDTKGKGKAKAKCKVQCPLPASASASASAGHEGKSKRRPSSSFKGVRLRQWGRYAAEIRNPLQKKNRVWLGTFDTELQAAAAYCQKKQDFAAQMLALQNQNGNAKQD 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2538 123 MobiDBLite consensus disorder prediction 1 24 - -
Aed5g2538 123 MobiDBLite consensus disorder prediction 1 20 - -
Aed5g2538 123 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 103 - -
Aed5g2538 123 SUPERFAMILY DNA-binding domain 57 106 IPR016177 GO:0003677
Aed5g2538 123 MobiDBLite consensus disorder prediction 37 62 - -
Aed5g2538 123 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Aed5g2538 123 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Aed5g2538 123 Pfam AP2 domain 58 101 IPR001471 GO:0003700|GO:0006355
Aed5g2538 123 Gene3D AP2/ERF domain 58 110 IPR036955 GO:0003700|GO:0006355
Aed5g2538 123 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 27 103 - -
Aed5g2538 123 SMART rav1_2 58 120 IPR001471 GO:0003700|GO:0006355
Aed5g2538 123 CDD AP2 57 99 IPR001471 GO:0003700|GO:0006355
Aed5g2538 123 ProSiteProfiles AP2/ERF domain profile. 58 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2538 Aed-Chr5 26332322 26332693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2538 40 110 AP2-EREBP Transcription Factor Family AT1G49120 52.113 1.30e-17 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed5g2538 AP2 4.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2538 - - lang:109341581 82.8037