Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2528 ATGTATGGCGGTGACGAAGTATCAGCTATAGTGATAGACCTGGGTTCGCATACATGCAAAGCCGGTTACGCTGGCGAAGATGCTCCCAAGGCCGTCTTTCCCTCTGTTGTTGGTGCAATTGACCAAATGGACATTGATGGAACTGGTGATGTTGATGAGAACTCGGGAGCTGCCGTGGATTTACAAAACAATGCCAAAAATAATGACTATGAAAAAACCAAGGGAAAATGCAAACTTTATGTAGGATCTCAGTCACTAGGATACCGCAGAGACCATATGGAGGTGTTGTCACCATTAAAGAATGGAGTTGTTGTTGACTGGAATATTGTAGACAACATATGGGATCATGCTTTGAGGGAATGCCTCCTAGTCGATCCTAAAGAGCGTCCAATGCTACTTGCTGAACCATGTTCCAACACGCAAGAACAGAGAGAAAGGGCAGCAGAACTTATGTTTGAAAAATATAAAGTACCAGCATTGTTTTTGGCAAAGAATGCTGTTCTTACATCTTTTGCATCAGGACGTGCTACCTCATTAGTTGTTGATAGTGGTGGTGGATCAACTACAGTTGTACCAGTACTGGATGGTTATGTTCTTCAAAAGGGTATCTCCGTAATCATTGCTTTAGCCACTGTTGTGGCTAAAAAGGCCCTCCTAATAATTGTCTTCTCTGGGGGTGTGATAACCTCTCCTATTGGAGGAGATTTTCTGACAGATTGCTTGATGAAAAGTTTGGAAGGCAAAGGTATCACAATAAGACCTCGATATTCATTCAAGAAAAAGGAAATACACCCTGGAAATCTTCAGACTGTAGACCTTGATTTTCCACATACAACTGAAAGCTACAAACTCTACTCCCAGAGGGTGATTGCTAGTGACATCAAGGAATGTGTTTGCCGAACACCAGATTCTCCATATGATGAGAGGGCATATTCAAACATTCCTATGACTCCATACGAGCTTCCTGATGGCCAGATTATTGAAGTTGGATCTGACAGATTCAAGATCCCTGATATTCTTTTTAATCCATCATTGGTTCAGACAATCCCTGGCATGGAGAGTTTTGCAGAAATTGCTCCTTCAATTCGCAGTCTTCCAAAAATGATTATAGAGAGCATTAATAAGTGTGATGTGGACATTCGTAGAGAACTATTTAGTACCATACTGCTTACTGGAGGTACAGCTTCAATGCTACAATTGAAGGAACGGATTGAGAAAGACTTGCTAGAGGAGTCCCCTCAAGCTGCTAGAGTAAAAGTATTTGCCAGTGGAAATGCAACTGAAAGAAGGTTCAGGTGGGATGTTCATCTCTCTCTTTCTCTTTCTCTCAAGTTCACACATCTTGTTTGGATAGGGGGGAGTATACTGGCTTCTCTTGGCTCCTTCCAGCAGATGTGGTTCTCCAAGTCCGAGTACGAAGAGCAAGGTGCTTCATATATTCAAAGAAAGTGCCCTTAG 1458 0.4232 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDGTGDVDENSGAAVDLQNNAKNNDYEKTKGKCKLYVGSQSLGYRRDHMEVLSPLKNGVVVDWNIVDNIWDHALRECLLVDPKERPMLLAEPCSNTQEQRERAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVVPVLDGYVLQKGISVIIALATVVAKKALLIIVFSGGVITSPIGGDFLTDCLMKSLEGKGITIRPRYSFKKKEIHPGNLQTVDLDFPHTTESYKLYSQRVIASDIKECVCRTPDSPYDERAYSNIPMTPYELPDGQIIEVGSDRFKIPDILFNPSLVQTIPGMESFAEIAPSIRSLPKMIIESINKCDVDIRRELFSTILLTGGTASMLQLKERIEKDLLEESPQAARVKVFASGNATERRFRWDVHLSLSLSLKFTHLVWIGGSILASLGSFQQMWFSKSEYEEQGASYIQRKCP 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2528 485 PANTHER ACTIN 222 484 IPR004000 -
Aed5g2528 485 Pfam Actin 225 484 IPR004000 -
Aed5g2528 485 Pfam Actin 4 204 IPR004000 -
Aed5g2528 485 PANTHER - 222 484 - -
Aed5g2528 485 PANTHER - 2 202 - -
Aed5g2528 485 Gene3D - 439 485 - -
Aed5g2528 485 PANTHER ACTIN 2 202 IPR004000 -
Aed5g2528 485 Gene3D - 346 431 - -
Aed5g2528 485 Gene3D Actin; Chain A, domain 4 232 345 - -
Aed5g2528 485 SUPERFAMILY Actin-like ATPase domain 5 181 IPR043129 -
Aed5g2528 485 SMART actin_3 7 485 IPR004000 -
Aed5g2528 485 Gene3D - 4 192 - -
Aed5g2528 485 SUPERFAMILY Actin-like ATPase domain 175 484 IPR043129 -
Aed5g2528 485 CDD NBD_sugar-kinase_HSP70_actin 97 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2528 Aed-Chr5 26262430 26269171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2528 1 484 Cytoskeleton Gene Families AT5G09810 33.265 1.47e-78 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2528 K11340 - gmx:100819549 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2528 5 26262430 26269171 Aed5g2528 5 26262430 26269171 ECH