Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2523 ATGACTGAAACTAAGTTAACCAGTAAGATAACTAAGAAACAAGACACTAAGAAAGTTTCTAGTTTCAGCCATCAGCCCTCTAGAAAGCAATCTCGGAAGGGTGAAAACCCTACACGACTCGTACCTCCTCCTGACCAGTCTTCTGATTTTGTCCATTCAAACACTTGGATTTGTAAAAATGCTGCTTGTAGGGCAGTTCTGTCTATGGATGACACATTTTGTAGAAGATGTTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGTACATCTGAATCTGCTCAAGGGGACTCCTGTGGGTTGTCTTGCCATATCGAATGTGCCCTTCAACATGAAAAGGTGGGAGTTGTTGATCATGGGCAACTGATGCAACTAGACGGTGGCTATTGTTGTGCGTCCTGTGGTAAAGTTACGGGGATACTTGGATGCTGGAAGAAGCAGCTAAATATAGCTAAGGATGCCCGGCGTGTAGATGTACTCTGTTACAGGATATATTTGAGCTACAGGCTCCTCGATGGAACCTCAAAATTCAAAGACTTGCATCAAACAGTACAGGAGGCAAAGGCTCAACTGGAGACAGAAGTTGGTCCTGTTAATGGTGTTTCAGCAGCCAAGATGGCTCGAGGCATTGTCAGCAGACTCCCGATTGCCAGTGATATACAGAAACTCTGCTCTCTTGCTATCGAGAAAGCTGATATGTGGCTCGCCACTGTTCCCAATGTAAATCCAGATTCCACAGAGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCAGCCAAAATCATTTTAATTGAAATGTCAAATATATGTTCTGAGGAAATTATGGGATACAAGCTCTGGTATTACAAGAGTCGGGATGAATCACCCACTAAAGATCCTGTTTCCGTGTTTCCCAAATCTCAGAGGAGAATTTTGATATCCAACCTCAAGCCTTGCACAGAATATACTTTTCGGATTATATCTTACACTGATACATGTGACTTGGGTCATTCTGAGGTTAAGTGTTTCACCAGGAGCATTGAGATAATTAAGAACAATCCTTCTTCATCTGTTGCTATGAATAATGAAAAAGAGAACCATATTACTAGGGGTAATTCTTCAGGCTCCAAGATAGGGCCCAATGCCACAATGGAAGACTATGGATTCAAGGTTCGAGACCTTGGAAAAGTTTTGCGTCTTGCTTGGGCTCAAGAACAAGGTTACTTGGAAGAGATTTGCTGTGCCAATGTGAAAAATTGCTGTGGACAAAGTGAAATGGTGGATAAGCCTAGAATTCCAGAAGTACAGTTGCCTTCAGTTTCACGAGGCCTTGATTTAAATGTTGTTTCAGTTCCTGATTTAAATGAAGAGCTAACACCACCTTTTGAGTATTCTAGGGATGAAGATAATGGTTGCTCTTTGCTGCAAGCTGTTGAGGCAGATGATGATGCTGCTTCTCATGATCTAGAGAAAAATGGTTTAGCAAGATCACATGGGAGTGGGGATTCCCAGACTTGGACCCATGGGCCAACAGGAGAAGTGTCTGCTGTTGATTCTCGCAGAGACATGTGCAGGAAAAGGATAGCAAGCACAAACGAAGAGACTCATGATTGTGACAGCACTTTGATAAATGGTTCTCCTTTACGCATATCTGATGGTTCATGTTCCTTGGATGAGAACTTTGAGTATTGTGTGAAAGTTATTCGTTGGCTAGAATGTGAGGGTCACATCAAACAAGAATTTAGGTTGAAATTGCTAACATGGTTTAGTTTAAGGGCGACAGAGCAAGAACGCAGGGTGGTTAATACCTTCATTCAAACTCTTATGGACGATCCAAGTAGTTTGGCAGGACAACTGGTAGACTCTTTTTCTGATATTATATCCAACAAGAGGCTAAGAAATGGATTCTGTAGTAAAGCTGGGGCATCAAATTAA 1959 0.4196 MTETKLTSKITKKQDTKKVSSFSHQPSRKQSRKGENPTRLVPPPDQSSDFVHSNTWICKNAACRAVLSMDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTSKFKDLHQTVQEAKAQLETEVGPVNGVSAAKMARGIVSRLPIASDIQKLCSLAIEKADMWLATVPNVNPDSTEGSLPAACKFVFEEVTTSSAKIILIEMSNICSEEIMGYKLWYYKSRDESPTKDPVSVFPKSQRRILISNLKPCTEYTFRIISYTDTCDLGHSEVKCFTRSIEIIKNNPSSSVAMNNEKENHITRGNSSGSKIGPNATMEDYGFKVRDLGKVLRLAWAQEQGYLEEICCANVKNCCGQSEMVDKPRIPEVQLPSVSRGLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLLQAVEADDDAASHDLEKNGLARSHGSGDSQTWTHGPTGEVSAVDSRRDMCRKRIASTNEETHDCDSTLINGSPLRISDGSCSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRATEQERRVVNTFIQTLMDDPSSLAGQLVDSFSDIISNKRLRNGFCSKAGASN 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2523 652 MobiDBLite consensus disorder prediction 1 19 - -
Aed5g2523 652 ProSiteProfiles Fibronectin type-III domain profile. 258 357 IPR003961 GO:0005515
Aed5g2523 652 PANTHER VIN3-LIKE PROTEIN 2-RELATED 4 647 IPR044514 GO:0010048|GO:0040029
Aed5g2523 652 Gene3D Immunoglobulins 245 347 IPR013783 -
Aed5g2523 652 PANTHER VIN3-LIKE PROTEIN 1 4 647 - -
Aed5g2523 652 MobiDBLite consensus disorder prediction 500 525 - -
Aed5g2523 652 MobiDBLite consensus disorder prediction 1 49 - -
Aed5g2523 652 Pfam PHD - plant homeodomain finger protein 58 176 IPR032881 -
Aed5g2523 652 CDD FN3 288 339 IPR003961 GO:0005515
Aed5g2523 652 MobiDBLite consensus disorder prediction 505 520 - -
Aed5g2523 652 Pfam Fibronectin type III domain 264 340 IPR003961 GO:0005515
Aed5g2523 652 SUPERFAMILY Fibronectin type III 264 340 IPR036116 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2523 Aed-Chr5 26223455 26233163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2523 54 643 PHD Gene Family AT3G24440 47.264 5.08e-174 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2523 - - gmx:100816128 1256.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2523 5 26223455 26233163 Aed5g2523 5 26223455 26233163 ECH