Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2521 ATGGCAAGTAGACTGAAGGAAGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAACTCACACCAAATCGAAGATGTATTAACTGTAACAGCTTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACTAACTGTAGCGGAATACACCGAGAATTTACACATCGGGTAAAATCAGTTTCAATGGCTAAATTTAGTGCACAGGAAGTTAGTGCACTTCAAGAACGAGGAAATCAGCATGCAAAGGAAATCTATTTTAAAGAATGGGATCCACAACGTCATTCTTTGCCTGATAGTAGCAATGTTGACAAGCTCCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCAGCAGTGAGAGGACTTATGACAAACCTCCAAGAGTAAAGGGTGACAAGGATGATTTTCATGAAAACAAGAGGACAGAGACGACTCAGGGAAGCCCTTCATATGAGGACACACATGAACGTCGTTACAGTGACAGGTCTAGTCCTGGTGGAAGAAGTCCTGGATATGATCAAGAAATTAGGCAATATGGTGATTACAAGAAAAGCCCTGGTCGTCCTCCAATAATCAATGATTGGCATCGAGAAGATAGATTTGGTGATGGACAGAAATTTGAAGATCATAGAATATCTGATGGAAATCATAAGGTGGAAAGTGCTTCTCCTGAGCGAACCAAGGATCTTGGTTCTTCCAGCCCACCTGTGGTCCGACCTGTTAGAGAGATCTTGGGAGAAAATGTAGTACCTCTTCGAATAAGTGAACCACCCAAAACAAACAGTGGACAGGCTGCTAATGGCTCAGCACTCACACAGAGAACTGCATCTTCCAGTAGCTTAGCATCCAGCAATGGAACCCCTGCAGAGGTTAAGCTTGAGACTATTAGGAGCCTTATTGATTTTGATGATGATCCTGAACCACCTGTTGCTTCAGCAGTTCCTCAAGCCCAGCAAACTACTGTGGCTCAATTTGGGATGCCTGCAAATTCCAATGGTAATAATTGGGCCTCTTTTGATGTTGCTGCTGAGGCAAAAGCACCTCAGGGTCCTTTGATTGTAAATCCACTTGAATCCATGCTGACACAATTGTCAGTACCAGTATCTTTACCTTCTCAGGTTTCTGGAGCCCAAGGACCTGTGACGGGATCAGCTCTTACCGCTACTGCTGCAGGAGCTTCAACTGTTAGCAACTTCTCAGCATTCCCAGCCAGTGGTGCTTCAGTAACATCTTTTGGATTATCGGCAGCACCAGCTCTCAATAATGCAGGGCAGTGGGCTACTTTGCAGTATCAGCAACAGCAACCTTTGTTCACTGCTGCTGCTAATCAGCCTACTATTCAACAATCCACACCACCAGTTGGTGGAGCTTTGAATAATCAGCCATGGACTGTACCTTCTGTACCATCGGTACAAGGGCATCCAAGCTCACCAATGCCTCATGTTCATGCATCACACCTTGTCCCAAATCCTGCCAATGAGGCTAAATCCAGTGTTGTTTTACAACCTTCTACAACAGACATAAAACCAAGTGGAAGAAGTGAGCTTCCTGAGGATCTATTCACTGTAAAATATTCACCCTTCCCTGCTCCAGTCCCAGGTTGGCAAATGGGTCCACCACCTAGCATGGGTATCTCAATTCAATACAATAATTCGGTGCCCCTGCCAAGTTATCCACAACCATCAAAATCAACAAATCCATTTGATGTCAGTCACGAACCAACTCCAGTTCAAGCCCCAACATTCCCTTCCATGTCATCTTTGCAAGGTGCTCTGCCTAGTGTAAGACCTTCAGCTACAATGCACCCGTCAAACATGGGTAATCTATCTTTTGCCTGGAATCCACCCTCATCATCATCTTATGTATCAGTGCTGCCTCCTCAAGTACAAACTCTTGCACCGGCAATGGGATCAGGGGCATACATGGGACAACAAATGGCAACTAACATGCCAATGCCAAGGCATCAAGGAATTGGGAGTTTTACTACTGAGGGAAGTGGTTTTGGATTCCCAAATCCAGATCAGCAGCTGACTGGTAGGTGGTCAACTGCTGCTACCCCAAACCCCTACCAATACCATGCAGGAGGGAACCCTTTCGGGTGA 2118 0.45 MASRLKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFSAQEVSALQERGNQHAKEIYFKEWDPQRHSLPDSSNVDKLRDFIKHVYVDRRFSSERTYDKPPRVKGDKDDFHENKRTETTQGSPSYEDTHERRYSDRSSPGGRSPGYDQEIRQYGDYKKSPGRPPIINDWHREDRFGDGQKFEDHRISDGNHKVESASPERTKDLGSSSPPVVRPVREILGENVVPLRISEPPKTNSGQAANGSALTQRTASSSSLASSNGTPAEVKLETIRSLIDFDDDPEPPVASAVPQAQQTTVAQFGMPANSNGNNWASFDVAAEAKAPQGPLIVNPLESMLTQLSVPVSLPSQVSGAQGPVTGSALTATAAGASTVSNFSAFPASGASVTSFGLSAAPALNNAGQWATLQYQQQQPLFTAAANQPTIQQSTPPVGGALNNQPWTVPSVPSVQGHPSSPMPHVHASHLVPNPANEAKSSVVLQPSTTDIKPSGRSELPEDLFTVKYSPFPAPVPGWQMGPPPSMGISIQYNNSVPLPSYPQPSKSTNPFDVSHEPTPVQAPTFPSMSSLQGALPSVRPSATMHPSNMGNLSFAWNPPSSSSYVSVLPPQVQTLAPAMGSGAYMGQQMATNMPMPRHQGIGSFTTEGSGFGFPNPDQQLTGRWSTAATPNPYQYHAGGNPFG 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2521 705 MobiDBLite consensus disorder prediction 127 243 - -
Aed5g2521 705 MobiDBLite consensus disorder prediction 127 147 - -
Aed5g2521 705 CDD ArfGap_AGFG 12 124 - -
Aed5g2521 705 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Aed5g2521 705 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Aed5g2521 705 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Aed5g2521 705 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Aed5g2521 705 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Aed5g2521 705 PANTHER ARF GTPASE ACTIVATOR 1 705 - -
Aed5g2521 705 MobiDBLite consensus disorder prediction 255 294 - -
Aed5g2521 705 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Aed5g2521 705 SMART arf_gap_3 12 126 IPR001164 GO:0005096
Aed5g2521 705 PANTHER ARFGAP/RECO-RELATED 1 705 IPR044820 GO:0005096
Aed5g2521 705 MobiDBLite consensus disorder prediction 260 294 - -
Aed5g2521 705 MobiDBLite consensus disorder prediction 195 230 - -
Aed5g2521 705 Pfam Putative GTPase activating protein for Arf 13 125 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2521 Aed-Chr5 26201475 26208497 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2521 12 122 C2H2 Transcription Factor Family AT4G21160 30.172 3.84e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2521 - - gmx:100815114 1178.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2521 5 26201475 26208497 Aed5g2521 5 26201475 26208497 ECH