Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2516 ATGAGTGCTGATCTCTCTAACTCCTTCCTCAACATGATGCCCACCATCAAGTTTACCAAGCTCTTCATCAATGGACATTTTGTTGATTCTATATCAGGAAGAACATTTGAGACAATAGATCCGAGAACAGAAGAGGTAATTGCAAGAGTTAGTGAGGGAGATAAAGAAGACATTGATCTTGCTGTTCAAGCAGCACGTGAGGCATTTGACAATGGTCCATGGCCTCGCTTACCCGGCTCTGAAAGGGCAAAAAGAATGATGAAATTGGCAGAGCTAATTGATGAGAACATAGATGAAGTAGCGGCATTAGATGCGATTGATGGTGGGAAGCTGTACTATATAAACAAGGTTGTGGAAATTCCTTCCGGTGCAAATGCATTACGGTACTATGCAGGTGCCGCTGATAAAATTCATGGAGACGTATTAAAAATGAACGGAGAATACCATGCATACACTCTAATGGAACCAATTGGTGTAGTGGGACACATAATTCCCTGGAATGCCCCTTCCCTTTTGTTTTTCACAAAGGTTAGCCCTGCCTTAGCTGCAGGTTGCACCATGGTCCTCAAGCCTGCTGAACAAACACCTCTCTCTGCTTTGTTTTATGCCCATTTAGCTAAGCTCGCTGGAATCCCAGATGGAGTTCTGAATGTGGTACCCGGATTTGGCCCAACTGCTGGTGCAGCTATAAGCTCACACATGGGCATAGATGCGGTGAGTTTTACTGGTTCAGTTGAAGTAGGGCGTGAAGTGATGCAAGCTGCAGCTAGGAGCAACCTAAAACCGGTTTCACTTGAATTAGGAGGCAAGTCTCCTCTCATTATTTTCGATGATGTTGATGTAGACAAGGCTGCTGAGCTTGCTCTCTTTGGCATCATGTCTAACAAGGGAGAAATTTGTGTGGCAAGTTCTCGTGTGTTCGTCCAAGAAGGCATCTATGATCAATTTGAGAAGAAGTTGGTGGAGAAGGCTAAATCTTGGATCGTTGGGGATCCTTTTCATCCCAAAACGATGCAAGGCCCGCAGACTGACAGGAACCAATTGGAGAAAATACTTTCCTATATTGAGCACGGAAAGAGAGAAGGAGCCACCCTTTTGACCGGAGGTAATACACTGGGCAACAAAGGTTACTACATACAACCTACGATTTTCTCCAATGTTAAGGAGGACATGCTTATTGCACAAGATGAAATATTTGGCCCTGTTCTGGCGCTGATGAAGTTTAAGACGATGGAAGAAGCTATTAAAAGTGCTAACAATACCAAGTATGGGCTAGCCGCAGGCATTGTGACTAAGAATTTGGATATTGCAAACACAGTGTCAAGGTCCATTCGTGCAGGCATTGTTTGGATCAACTGCTATTTAACCACTGGGAGTGACGTTCCTTTTGGAGGGTATAAGATGAGTGGATTTGGAAGAGATTGGGGTTTACATGCCCTTCACAAGTACTTACAAGTTAAATCCGTTGTAACACCAATTCGCAATTCTCCTTGGCTTTGA 1500 0.44 MSADLSNSFLNMMPTIKFTKLFINGHFVDSISGRTFETIDPRTEEVIARVSEGDKEDIDLAVQAAREAFDNGPWPRLPGSERAKRMMKLAELIDENIDEVAALDAIDGGKLYYINKVVEIPSGANALRYYAGAADKIHGDVLKMNGEYHAYTLMEPIGVVGHIIPWNAPSLLFFTKVSPALAAGCTMVLKPAEQTPLSALFYAHLAKLAGIPDGVLNVVPGFGPTAGAAISSHMGIDAVSFTGSVEVGREVMQAAARSNLKPVSLELGGKSPLIIFDDVDVDKAAELALFGIMSNKGEICVASSRVFVQEGIYDQFEKKLVEKAKSWIVGDPFHPKTMQGPQTDRNQLEKILSYIEHGKREGATLLTGGNTLGNKGYYIQPTIFSNVKEDMLIAQDEIFGPVLALMKFKTMEEAIKSANNTKYGLAAGIVTKNLDIANTVSRSIRAGIVWINCYLTTGSDVPFGGYKMSGFGRDWGLHALHKYLQVKSVVTPIRNSPWL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2516 499 PANTHER CYTOSOLIC ALDEHYDE DEHYDROGENASE RF2C 5 499 - -
Aed5g2516 499 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 23 487 IPR016162 GO:0016491
Aed5g2516 499 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 5 499 - -
Aed5g2516 499 SUPERFAMILY ALDH-like 9 493 IPR016161 GO:0016491
Aed5g2516 499 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 265 272 IPR029510 GO:0016491
Aed5g2516 499 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 269 458 IPR016163 GO:0016620
Aed5g2516 499 Pfam Aldehyde dehydrogenase family 28 489 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2516 Aed-Chr5 26178868 26182572 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2516 13 499 Aldehyde Dehydrogenase Gene Family AT3G24503 70.082 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2516 K12355 - gmx:100527654 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2516 5 26178868 26182572 Aed7g0151 7 1044969 1047413 PCT