Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2503 ATGCCTTCTCTCTCCGTCTTCCCATCGCTTCAAAACCCTAACTTGAGCCAACCCCACCTCTCCATTTTCCATGCGATTCCATTACCGCCACTCATCAAAAGCTCTGTAACTCTTCATCGTAGAATCCTCTGCAAAGCTTTCAGGGATTCCGGCGAGGACATCAAGGCGGTGCTCAAGTCTGACGACGGGGGTGGCGGAGATGATGGCGGCGGCGGCGGCGACGGTGGGGGTGACCGGGATGCGGAGAAGAAGAAAGAAGGGCCTTTGCCGGAGTGGCTCAATTTCACTTCTGATGACGCCAAAACGGTGCTTGCGGCTCTCGCAATTTCGCTCGCGTTTCGAACGTTCGTGGCAGAGCCGAGGTACATTCCTTCGCTGTCTATGTATCCTACATTCGATGTTGGAGATCGAATTGTTGCTGAGAAGGTATCATACTATTTTAGAAAACCATGTGCAAGTGACATAGTGATATTTAAAAGCCCTCCGGTGCTTCAAGAAGTTGGATATAGCGATGATGATGTTTTTATAAAGCGTGTGGTTGCAAAGGAAGGTGATATTGTGGAGGTTCGTAAAGGGCATCTTGTAGTTAATGGGGTTGAGAGGAATGAAAAGTACATCCTTGAACCACCTGCTTATGAGATGAAACCCACGCGTGTGCCAGACAACTACGTTTTTGTAATGGGAGACAACCGCAATAACAGCTATGACTCCCATGTTTGGGGTCCCCTTCCAGCCAAGAATATAATAGGTAGATCAGTATTTCGCTATTGGCCACCAAATAGAATTGCTGGCACTGTTTCTAAGGACAGTTGCACTGTTGAAACCACGCAAGAGAGTGCAGAGACAGCTCCAGCTCCATCTCCAGTTATACCAACTCAATGA 882 0.4841 MPSLSVFPSLQNPNLSQPHLSIFHAIPLPPLIKSSVTLHRRILCKAFRDSGEDIKAVLKSDDGGGGDDGGGGGDGGGDRDAEKKKEGPLPEWLNFTSDDAKTVLAALAISLAFRTFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYFRKPCASDIVIFKSPPVLQEVGYSDDDVFIKRVVAKEGDIVEVRKGHLVVNGVERNEKYILEPPAYEMKPTRVPDNYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAGTVSKDSCTVETTQESAETAPAPSPVIPTQ 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2503 293 TIGRFAM sigpep_I_bact: signal peptidase I 101 259 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aed5g2503 293 MobiDBLite consensus disorder prediction 57 89 - -
Aed5g2503 293 CDD S26_SPase_I 119 251 IPR019533 GO:0004252|GO:0006465
Aed5g2503 293 SUPERFAMILY LexA/Signal peptidase 114 263 IPR036286 -
Aed5g2503 293 PANTHER SIGNAL PEPTIDASE I 82 269 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aed5g2503 293 ProSitePatterns Signal peptidases I signature 3. 224 237 IPR019758 GO:0004252|GO:0016021
Aed5g2503 293 PRINTS Bacterial leader peptidase 1 (S26A) family signature 175 187 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aed5g2503 293 PRINTS Bacterial leader peptidase 1 (S26A) family signature 116 132 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aed5g2503 293 PRINTS Bacterial leader peptidase 1 (S26A) family signature 219 238 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aed5g2503 293 MobiDBLite consensus disorder prediction 270 293 - -
Aed5g2503 293 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 82 269 - -
Aed5g2503 293 MobiDBLite consensus disorder prediction 73 89 - -
Aed5g2503 293 Pfam Signal peptidase, peptidase S26 100 257 IPR019533 GO:0004252|GO:0006465
Aed5g2503 293 ProSitePatterns Signal peptidases I serine active site. 125 132 IPR019756 GO:0004252|GO:0016021
Aed5g2503 293 MobiDBLite consensus disorder prediction 270 287 - -
Aed5g2503 293 Gene3D Umud Fragment, subunit A 113 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2503 Aed-Chr5 26100646 26103264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2503 128 258 MADS-box Gene Family AT1G29960 31.818 5.19e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2503 K03100 - gmx:100815810 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2503 5 26100646 26103264 Aed5g2503 5 26100646 26103264 ECH