Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2493 ATGGAGATGGATCCTCCACCGAAGAGCTGGAGCATCTATACCCGATCGGAGATAATCGCAAAATACGAGGTCATGGAGCGGGTCGGGTCGGGAGCCTACGCCGACGTGTACCGCGGCCGTCGCCTCTCCGACGGCCTCACCGTGGCCCTCAAGGAAATCCATGACTACCAGTCCGCCTTCCGAGAAATCGACGCGTTGCAGCTCCTCCAGGGCTCCCCAAACGTCATCGTTTTACACGAGTTCTTCTGGCGCGACGACGAAGACGCCGTCCTCGTCCTCGAGTTCCTCAGAACCGACTTGGCCACCGTCATCGCCGACGCCGCCAAAGCCAACCAACCCCTCCCCGCCGGCGAGCTCAAACGCTGGATCATCCAGATTCTCTCCGGCGTCGACGCCTGTCACCACCACATGGTCCTCCACCGAGATTTGAAGCCCTCTAACCTCTTAATTTCCGAACACGGCCTCCTCAAGATCGCCGATTTCGGACAGGATACTACTACTAGCACCCAGGATGGGAATGCAACATGCACCACAAGTGACGTAGATAGGGAAGAGGAAGAGAAAGAACTTGGTTGTTTGACGTCATGCGTGGGGACTCGTTGGTTTAGGGCTCCTGAGTTGCTTTATGGATCCAGAGACTATGGTCTGGAGATTGATTTGTGGTCCTTGGGATGTATCTTTGCAGAACTTTTAACTCTACAACCTTTGTTTCCTGGAACTGCTGATATTGACCAGCTTAGTAGAATCATTGATGTTTTGGGTAACCTTGATGAGAGTGCTTGGGCTGGTTGTTCTAGACTTCCTGATTATGGCATAATCTCCTTTAGCAAGGTGGAGAAACCTGCTGGCCTTGAAGCTTGTTTGCCCAATCGGTCCCCTGATGAAGTGGCTCTGGTGAAAAGACTGGTTTGTTATGATCCTGCTAAGAGGGCTACGGTGATGGAGCTTCTTCATGACAAGTACTTTAGTGAAGAGCCTCTTCCTGTTCCGGTTTCTGAGCTGCGAGTTCCTTTGACCAGAAAAGGGCAAGATGAGGATTCCCCTGGTAGGTGGGGTGATTTCGATGAAATGGATTCTGATTCTGATTTTGATGAGTTTGGCCCTCTGAATATCACAAGGACTGGTACCGGTTTCTCCATACAGTTTCCTTGA 1152 0.5182 MEMDPPPKSWSIYTRSEIIAKYEVMERVGSGAYADVYRGRRLSDGLTVALKEIHDYQSAFREIDALQLLQGSPNVIVLHEFFWRDDEDAVLVLEFLRTDLATVIADAAKANQPLPAGELKRWIIQILSGVDACHHHMVLHRDLKPSNLLISEHGLLKIADFGQDTTTSTQDGNATCTTSDVDREEEEKELGCLTSCVGTRWFRAPELLYGSRDYGLEIDLWSLGCIFAELLTLQPLFPGTADIDQLSRIIDVLGNLDESAWAGCSRLPDYGIISFSKVEKPAGLEACLPNRSPDEVALVKRLVCYDPAKRATVMELLHDKYFSEEPLPVPVSELRVPLTRKGQDEDSPGRWGDFDEMDSDSDFDEFGPLNITRTGTGFSIQFP 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2493 383 PANTHER CELL DIVISION PROTEIN KINASE 11 338 - -
Aed5g2493 383 MobiDBLite consensus disorder prediction 338 383 - -
Aed5g2493 383 MobiDBLite consensus disorder prediction 338 356 - -
Aed5g2493 383 Gene3D Phosphorylase Kinase; domain 1 14 108 - -
Aed5g2493 383 ProSiteProfiles Protein kinase domain profile. 22 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2493 383 SUPERFAMILY Protein kinase-like (PK-like) 14 328 IPR011009 -
Aed5g2493 383 SMART serkin_6 22 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2493 383 Pfam Protein kinase domain 22 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2493 383 PANTHER CYCLIN-DEPENDENT KINASE 10 11 338 - -
Aed5g2493 383 Gene3D Transferase(Phosphotransferase) domain 1 109 325 - -
Aed5g2493 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Aed5g2493 383 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2493 Aed-Chr5 26060859 26062717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2493 164 383 Core Cell Cycle Gene Families AT4G28980 60.593 4.51e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Aed5g2493 Pkinase 8.1e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2493 - - gmx:100801952 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2493 5 26060859 26062717 Aed5g2493 5 26060859 26062717 ECH
Aed5g2493 5 26060859 26062717 Aed7g0118 7 809751 811730 PCT