Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2488 ATGACCACCGTAACGGTCACCACTGGAGCTCAGATCCTCCGCCACACCGCCGTATTCACCTCTTCCCTACTTTCGCAATCCGAACTCCGGCGGCGCCTCATCGCCACTCTCCTCCGCGACATCTCAGTCTCCGACCAAAAACACCTGAACCTCGCCGCCGATACTCTAGAGAGCGCGATCTCGTTCTCGAGCACCGCCCTCCGTTCCTCATCCCTTTCCCTCGCGGAGAAGCTCCTCCTCCCTCTCCCCGAATTCCCCCTCTCCTCACTCCTCCTCTCCCTCATCCACGCCCTCCGTAACCGCCCAACCGAATCCGCCGTTAGCCTCCTCCGAATCTTCCATTCTAACAACAACAGCGCCTCCCTCGCCCGATCCGAAATCGCTCCCGCGCTGTACGAGCGGCTCTTTTCTCTCCACCTCTTCCCCGTCTTCCGCTGGTTCGATGATCAGAGGACGCGGATTCTCTCTTCGAGCCGTACTGATAATGATAACGATTATTCCGTAACTTCTGAGGAGTACTCCATGGTACTGCCTTGCGCGAAGGTGCTGTCGAAGATGAGCGAGGAGCAGGCCGCGAAGCTCAGGGAGGTCGAGAGAGAGTACGAGGAGGTCCTCGACCACAACTGCATGGTTCTCGCCGTCTATTTCAAAGAGGTTTTGCTTAATGAAAACGGTGACAAGGGGATTAGTCCACCGTCGTTGATACTCAAAAGTGCCACCGAAGGTACTTACGACGGCGGCGGCGGGGAGAACAGAAAGGAGGAGATGATGCAAATGGATGTGTTGGAGAACGGACGGTATAATCCAATGTGGTCCGAAAGGGACGGATCCATTGAATTTTTGAGTCCCAGTTCCAGCAGCAGATCTTCCCACGCGCCATATCCTCAAAGAGTCTTTTCCAGACATCTCAGACCTTCAAAAACTTCGACAACGCCAGTCTATTTAAACTCAACCGCTGAAAGTGATTTTTCCTTAGATGAGAGTTTGCATAATTCTTCTTCAGATTCTGAAGCAGAAAATGAGGAAAAGGACAAAACTGTTGCATTGTTGGAGCCTCGACAAAGCCAAATCCAAGAACAAATGCTAACCATCTTCGAACAATCCAGGGGTTCCCCCCCAGATTATCCTATGGCAGACTTGGACACCCCGCTGCATGGGATTGGAAAACATGCACCTCCCAAGGACTTTGTCTGTCCAATAACAAGTCACATATTTGATGATCCCGTGACTCTTGAGACAGGTCAGACATATGAACGTAAAGCTATCGAGGAATGGTTCAATAGAGGGAACTTAACCTGTCCCATCACACGCCAGAAGCTGCAAAACACCCAGCTACCCAAAACAAATTACGTGCTCAAACGACTAATTGCAAGCTGGAAAGATCGCAACCCCCATTTGGTCCCACCGCCGTATGAGAGTCCGTACGAAGATACCGAGGCTGTTGTTGTGAAGCCAACAATGCCTTCAGCTTCTCCTAATAGCGTTATAACGCAAGCCACCGTTGATGGGTTGATGAGTGAGTTACGCTGCGCAATCAATAACCTGTATATGTCAGAGGTTCTCCAGGAATCTGAAATGGCAGTGCTTCAAATCGAGAAGTTCTGGAGAGGAGTGGACGTAGGGGTGGATATCCACAGCATGCTATCAAAACCTGCGATAGTCAATGGATTTATGGAGATCCTTTTCAATTCTGTTGAGCCTCAGGTGCTGCAAGCAGCAGTTTTTCTTCTGACCGAGATGGGGTCTAGAGACAATGCTGTCATTAAGACTCTCACACGTGTGGACACTGACGTGGAATGTATCATGGCTCTTTTCAAGAACGGCTTGACCGAGGCTGTTGTGTTGTTGTATCTGCTAAACCCTTCCACTATGAGTCTTGCAGAGATGGCAATAGTAGAGTCTCTAATAACAGTTTTCAATAAGAAAGAGGAAGACTTGGTTAAGATGTGTTTGAGGCCCAAAACAGCTGCAGTGCTTTTACTTGCACGGATTATTGGAAGCAGTGAAGAGATCATTGCATCTTCGGTTGTCAATACCCTTTTCTCTGAAAAAGCAGTTGAAACTATTGTCGGCAGTTTGGGAGCTGACTTGGCAAAGGAGAGGATTGCTGCAGTGGAGATCTTGTTGAGATGCATGGAAGAAGACGGGACTTGCAGGAACAACATTGCTGATAAAGCAGAGTTGTCGCCTCTTTTGGAAACCTTAATCGGTGCAAATGATGGGGATCGGTTTAAGATTATTCAGTTTTTCTGTGAGTTAGTCAAATTAAATAGGCGGACATTCAGTGAACAAATCCTCCACATTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACTCTTCTTATTTATTTGCAGACAGCCCTTCAAGATCAATGTCCTGTTATGGCTGGCCTCTTACTCCAACTCGATCTTCTGGTTGAGCCAAGAAAAATGAGCATATACCGGGAAGAGGCAATGGATACTCTTATTTCATGCCTGAAAAACACAGATTTTCCCATTACCCAATTAGCAGCTTCTGATACAATTATGTCACTGCAAGGGAGTTTTGATTTCTCTGGAAACCCTCTAACCAGAGAAGTCCTTCTTAAACGTGCTGGTATCGTCAAAAGTTCCAGAAGTCTTGTACCGGTGGATCAGATCAACAACTTCAGCCCAGAAATTGATATAACTCCAGAAGAAGAGAAGACAGCTGATGATTGGGAAAGAAGAATTGCATCTGTTCTAGTTAGCCATGAGTTTGGCACTCTTTTTGAGGTTCTAGCAGATGGCATGAAGAGCCGAAATCCAGAACTACGATCAGCATGTTTTATATCAGCTACATGGCTCGTCTACATGTTGACCATTCTACCAGATACAGGGATTCAAGTAGCAGCTCGTGCCTGCCTGCTGAAGCAGTTCATAGCTAAATTAAATTCTGCTAAGGATGTAGAAGACAGAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTTCATTTCTCTGATGGCTTAGGTGATCTGACTTCCTACACTAAGGATATCATAAAAGGATTGAGAGAGCTAAAGAGATCCTGTCCCTTAGCATCTAAAATGCTAAAAATTCTGGTTGAAGAAAATGAATCTAAAGCGGAAATTTGGATACATAAAGAGCTCATAAAAGAAGACTGCAGCGAGAATGGAGAGGTGCTGTCTGTCATTTGCTTTAAGGATAAAATATTTTCAGGCCATACGGATGGCACTATTAAGGTCTGGACATTAAAGGATAACTTACTCCATCTGCTGCAAGAGATCCAAGAACATGCTAAGGCAGTGACAAACTTGGTGATTTCAGAATCTGATGACAGACTATACAGTGGTTCACTTGATCGAACTACAAAGGTCTGGTCTATTGGAAAGGCAGCAATACATTGTGTACAGGTGCATGACATGAAGGACCAGATTCATAATTTCGTTGTAATCAATAGCTTAGCTTGTTTCATTCCGCAGGGGACTGGTGTCAAGGTTCAGTCATTGAATGGAGAATCAAAGTTGTTAAATTCTAGTAAATATGTGAAGTGCTTGGCTCATGTGCATGGGAAATTATACTGTGGATGCCACGACAGTAGTGTTCAGGAGATACACTTGGCCACTGGAACAGTCAACACTATTCAAAGTGGTTATAAAAGATTACTTGGGAAAGCAAATCCTATTTATGCACTGCAAATTCGTGGTGAACTTATATATGCAGCTGGCTCTTCCTTGGATGGATCCGCTATAAAGATATGGAACAATTCCAATTACAGTATGATTGCATCACTGCAAACTGGATCTGAAGTGCGGGCTATGGCAGTGAGCTCAGAATTGATTTATTTGGGGTGCAAAGGAGGTACTGTGGAAATTTGGGATAAGAAGAAACACAATAGAGTTGACACGTTGCAAATGGGTACGAATTGTAGGGTTAATTGCATGGCTCTAGACAGCAATGAAGAAGTTTTAGTAATTGGAACTTCAGATGGACAGATTCAGGTGCCTTTCCATTAA 3999 0.4536 MTTVTVTTGAQILRHTAVFTSSLLSQSELRRRLIATLLRDISVSDQKHLNLAADTLESAISFSSTALRSSSLSLAEKLLLPLPEFPLSSLLLSLIHALRNRPTESAVSLLRIFHSNNNSASLARSEIAPALYERLFSLHLFPVFRWFDDQRTRILSSSRTDNDNDYSVTSEEYSMVLPCAKVLSKMSEEQAAKLREVEREYEEVLDHNCMVLAVYFKEVLLNENGDKGISPPSLILKSATEGTYDGGGGENRKEEMMQMDVLENGRYNPMWSERDGSIEFLSPSSSSRSSHAPYPQRVFSRHLRPSKTSTTPVYLNSTAESDFSLDESLHNSSSDSEAENEEKDKTVALLEPRQSQIQEQMLTIFEQSRGSPPDYPMADLDTPLHGIGKHAPPKDFVCPITSHIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKDRNPHLVPPPYESPYEDTEAVVVKPTMPSASPNSVITQATVDGLMSELRCAINNLYMSEVLQESEMAVLQIEKFWRGVDVGVDIHSMLSKPAIVNGFMEILFNSVEPQVLQAAVFLLTEMGSRDNAVIKTLTRVDTDVECIMALFKNGLTEAVVLLYLLNPSTMSLAEMAIVESLITVFNKKEEDLVKMCLRPKTAAVLLLARIIGSSEEIIASSVVNTLFSEKAVETIVGSLGADLAKERIAAVEILLRCMEEDGTCRNNIADKAELSPLLETLIGANDGDRFKIIQFFCELVKLNRRTFSEQILHIIKEEGPFSTMHTLLIYLQTALQDQCPVMAGLLLQLDLLVEPRKMSIYREEAMDTLISCLKNTDFPITQLAASDTIMSLQGSFDFSGNPLTREVLLKRAGIVKSSRSLVPVDQINNFSPEIDITPEEEKTADDWERRIASVLVSHEFGTLFEVLADGMKSRNPELRSACFISATWLVYMLTILPDTGIQVAARACLLKQFIAKLNSAKDVEDRILSMLALNSFLHFSDGLGDLTSYTKDIIKGLRELKRSCPLASKMLKILVEENESKAEIWIHKELIKEDCSENGEVLSVICFKDKIFSGHTDGTIKVWTLKDNLLHLLQEIQEHAKAVTNLVISESDDRLYSGSLDRTTKVWSIGKAAIHCVQVHDMKDQIHNFVVINSLACFIPQGTGVKVQSLNGESKLLNSSKYVKCLAHVHGKLYCGCHDSSVQEIHLATGTVNTIQSGYKRLLGKANPIYALQIRGELIYAAGSSLDGSAIKIWNNSNYSMIASLQTGSEVRAMAVSSELIYLGCKGGTVEIWDKKKHNRVDTLQMGTNCRVNCMALDSNEEVLVIGTSDGQIQVPFH 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2488 1332 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1090 1123 - -
Aed5g2488 1332 SUPERFAMILY RING/U-box 391 469 - -
Aed5g2488 1332 MobiDBLite consensus disorder prediction 302 331 - -
Aed5g2488 1332 Pfam U-box domain 393 463 IPR003613 GO:0004842|GO:0016567
Aed5g2488 1332 Gene3D - 549 1034 IPR011989 -
Aed5g2488 1332 SUPERFAMILY ARM repeat 21 1019 IPR016024 -
Aed5g2488 1332 SMART WD40_4 1252 1288 IPR001680 GO:0005515
Aed5g2488 1332 SMART WD40_4 1291 1331 IPR001680 GO:0005515
Aed5g2488 1332 SMART WD40_4 1083 1122 IPR001680 GO:0005515
Aed5g2488 1332 SMART WD40_4 1209 1249 IPR001680 GO:0005515
Aed5g2488 1332 SMART WD40_4 1157 1200 IPR001680 GO:0005515
Aed5g2488 1332 SMART WD40_4 1041 1078 IPR001680 GO:0005515
Aed5g2488 1332 Gene3D - 1037 1149 IPR015943 GO:0005515
Aed5g2488 1332 Gene3D - 1150 1330 IPR015943 GO:0005515
Aed5g2488 1332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 467 IPR013083 -
Aed5g2488 1332 Coils Coil 695 715 - -
Aed5g2488 1332 SUPERFAMILY WD40 repeat-like 1053 1329 IPR036322 GO:0005515
Aed5g2488 1332 ProSiteProfiles Trp-Asp (WD) repeats profile. 1090 1123 IPR001680 GO:0005515
Aed5g2488 1332 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1329 - -
Aed5g2488 1332 MobiDBLite consensus disorder prediction 281 345 - -
Aed5g2488 1332 Coils Coil 180 207 - -
Aed5g2488 1332 CDD RING-Ubox_PUB 396 438 IPR045210 -
Aed5g2488 1332 Pfam WD domain, G-beta repeat 1087 1122 IPR001680 GO:0005515
Aed5g2488 1332 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1329 - -
Aed5g2488 1332 ProSiteProfiles U-box domain profile. 391 466 IPR003613 GO:0004842|GO:0016567
Aed5g2488 1332 SMART Ubox_2 395 459 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2488 Aed-Chr5 26043585 26050289 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2488 393 479 U-box Gene Family AT5G42340 44.828 2.01e-17 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2488 - - gmx:100808867 2251.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2488 5 26043585 26050289 Aed5g2488 5 26043585 26050289 ECH