Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2487 ATGAATAGAGGTGTTTTGCAAAGCTCACCGGTGCAACAAATGATGGCTGGGAACCCTAACAACTGGTGGAACATCAATAACACCATGCGCCCTCCAGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCAAGCTTCTCTTCCTTTCTTCTCCTCCTCCAGTACTCCTAATTCTAACTTTCTAACTCCTTTTAACCCCACTTCTTCTTCTTCTCTTCCTCTTCCTTCTTGGCATGACAACAACAATCAAGACCTACCTGAGTCATGGAGCCAGCTACTCATGAGTGGGATGGTGTCTGATGAAGAACAGGAGCAACAAATGCTAAGTATTAAGCAAGAAAGCAGGTCGGTGAACAGCTATGTGTATGGGCATGGAAACGAACTAGAGTTTCAAGTAGCAGCAAACCCAACTTGGTCTCAAATAGTGCCTACAGCTTCTTCCCCCAAATCTTCATGTGTAACAAGTTTCAGCAGCAGCAGCAGCATGTTGGATTTCTCTAACAATAACACCGATGCGAGGCCTCCTCCACCAGATCCATCCTCAGAGTGTAATAGCAGTACTACTGCAACTGGTGGTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGCCCACAACTCAGTCGACGACCTTCAAGGTTAGGAAGGAGAAATTAGGTGACAGAATTACATCCCTTCATCAACTAGTTTCCCCATTCGGAAAGACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGGGCAGTGGATCAGGAAACATGAGGCACCAACAATCTGTAAGAAATAATACCAACCCAATTCTGGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCCGGTCAGTTGCTGAATGAAAACTGTTTGAAGAGGAAATTAGCAGCAGCTAGTGAGCAGGATTCTGAAGAAGAAGCAAAGAAGGGCCTGAGGAGTAGAGGGTTGTGCCTGGTTCCGGTGTCATGCACGCTGCAAGTTGGAAGTGACAATGGAGCTGACTATTGGGCTCCTGCATTTAGTGGGGGATTTCGGTAG 1080 0.4657 MNRGVLQSSPVQQMMAGNPNNWWNINNTMRPPAPPPPPPPPPQASLPFFSSSSTPNSNFLTPFNPTSSSSLPLPSWHDNNNQDLPESWSQLLMSGMVSDEEQEQQMLSIKQESRSVNSYVYGHGNELEFQVAANPTWSQIVPTASSPKSSCVTSFSSSSSMLDFSNNNTDARPPPPDPSSECNSSTTATGGGGAFKKARVQPPTTQSTTFKVRKEKLGDRITSLHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGNMRHQQSVRNNTNPILVQGEKNCIFPEDPGQLLNENCLKRKLAAASEQDSEEEAKKGLRSRGLCLVPVSCTLQVGSDNGADYWAPAFSGGFR 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2487 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 211 261 IPR036638 GO:0046983
Aed5g2487 359 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 345 - -
Aed5g2487 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 250 IPR011598 GO:0046983
Aed5g2487 359 MobiDBLite consensus disorder prediction 162 209 - -
Aed5g2487 359 MobiDBLite consensus disorder prediction 1 85 - -
Aed5g2487 359 CDD bHLH_AtbHLH_like 206 258 IPR045239 -
Aed5g2487 359 Gene3D - 202 261 IPR036638 GO:0046983
Aed5g2487 359 PANTHER OS05G0228400 PROTEIN 17 345 - -
Aed5g2487 359 MobiDBLite consensus disorder prediction 1 28 - -
Aed5g2487 359 MobiDBLite consensus disorder prediction 29 46 - -
Aed5g2487 359 MobiDBLite consensus disorder prediction 47 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2487 Aed-Chr5 26036783 26040436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2487 1 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 41.892 2.02e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2487 - - gmx:100785156 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2487 5 26036783 26040436 Aed5g2487 5 26036783 26040436 ECH
Aed5g2487 5 26036783 26040436 Aed7g0111 7 760522 764715 PCT