Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2485 ATGTCTGAGGCATTGGAAGAGGTAATGAAGAAAGGAGAAGGGTTGAACATGAAGGCCACTGAGCTGAGGCTTGGGTTGCCAGGGTGTGAGTCACCAGAGAGGGCCGGGGCCAAGAGGGGCTTCTTCTCTCCAACTGCAGACTGCTCCAACCAACCTACTGCTTCTCTTCTCAAGGAAACTCTTCCTAAACCCCACATTTCTGCTCCAGCTGCAAAAGCGCAAGTAGTGGGATGGCCACCAATCCGTTCATTCAGGAAGAACTCAATGGCTTCTCAGCCTCAAAAGAATGATGCTGATGCAGAAGCCAAGTATGTTAAAGTCAGCATGGAAGGCGCTCCATACTTGAGGAAAGTGGATCTCAATAGTTTTACCACTTACAGTGAACTCTCTTTGGCACTTGAAAAGATGTTTAGTTCTTTTACACTCAGTCAATGTGGCTCTTATGGGGTTTCTAGTCGAGAAAATTTAAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTTCTTACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCGTGGGAGATGTTCACCGAGTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTAGAGCCATGGAAAAGTGCAAAAGTCGCAACTAG 669 0.4619 MSEALEEVMKKGEGLNMKATELRLGLPGCESPERAGAKRGFFSPTADCSNQPTASLLKETLPKPHISAPAAKAQVVGWPPIRSFRKNSMASQPQKNDADAEAKYVKVSMEGAPYLRKVDLNSFTTYSELSLALEKMFSSFTLSQCGSYGVSSRENLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAMEKCKSRN 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2485 222 ProSiteProfiles PB1 domain profile. 102 204 IPR000270 GO:0005515
Aed5g2485 222 Gene3D - 96 216 - -
Aed5g2485 222 SUPERFAMILY CAD & PB1 domains 97 203 - -
Aed5g2485 222 Pfam AUX/IAA family 35 213 IPR033389 -
Aed5g2485 222 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 53 215 IPR003311 GO:0005634|GO:0006355
Aed5g2485 222 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 39 IPR003311 GO:0005634|GO:0006355
Aed5g2485 222 PANTHER AUXIN-INDUCED PROTEIN 53 215 - -
Aed5g2485 222 PANTHER AUXIN-INDUCED PROTEIN 10 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2485 Aed-Chr5 26010583 26012784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2485 105 212 B3 DNA Binding Superfamily AT4G23980 30.556 2.90e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed5g2485 AUX_IAA 4.8e-80 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2485 K14484 - gmx:100778529 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2485 5 26010583 26012784 Aed5g2485 5 26010583 26012784 ECH
Aed5g2485 5 26010583 26012784 Aed7g0110 7 743648 747016 PCT