Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2480 ACAGAAATACCCCCGCCTCCTCCGTTATTTATTTCGTCTATAATAATAATACCCTTCTCCCTCTGCTGCGTGCGCTTTGTGGCTTTGGTTTCTCTTCGCTCTGATGCTCTGCTATTTACTGACTCCCTTCTCGAACCTTCCAACATGGAACGCTTCGTCGGCGGCAAGTACAAGCTCGGCCGCAAAATCGGAAGTGGATCCTTCGGCGAAATCTACCTCGCGACGCATATTGACACCTTCGAAATCGTCGCCGTCAAGATCGAGAACAGTAAAACAAAGCACCCACAACTGCTTTACGAGGCAAAGCTCTACAATATTCTTCAAGGAGGAAGTGGCATTCCAAACATAAAATGGTCCGGCGTAGATGGGGAAGATAATGTGCTTGTTATTGACTTGCTTGGGCCGAGTCTTGAGGATCTTTTTGTGTATTGTGGAAGGAAGTTTTCATTGAAGACGGTATTAATGTTGGCTGATCAAATGGTTTACATAATTGATTTTGGGCTTGCAAAACGATATCGGGATTCCACTACCAATCGCCATATCCCTTACAGGGAGAACAAAAACTTAACGGGTACTGCTCGATATGCAAGTTGCAATACTCACCTTGGGATTGAGCAAAGTCGACGAGATGATTTGGAATCACTAGGATATGTACTTCTGTACTTCCTCAGAGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCTACAAAGAAACAAAAGTATGATAAAATATGCCAGAAGAAATTATCAACTCCTATTGAGGTACTATGCAAATCTCATCCTGTAGAGTTTGCTTCGTACTTCCATTATTGTCACTCTTTGACATTTGATCAGCGACCTGATTATGGATTCTTAAAGCGCCTATTTCGGGACCTATTTGCTCGAGAAGTGCTCCCTCCATTGTCTCCAGTTCCAGGATCAAGTAACAGTCGTGCAATTCCAATGGATATTGACAACCATAAAGGTCTTAATGCATATTCAGGGCATGCTAAAGAGTGTATTAGAGCAGGCGATGCTACTGGTTCTGGTGTTAAAATTCAGTTTAAACCACCAGTGGGTAAAAATTATGAGAATCCACTTGACAAAAATATTTTTGGAGAAGCAAATATACCCTCTACTTCATTTTCTCCTGCTAGTACTTCAAAAAGGAACTCCTTGAAGCAATCCTTGCCTGCTGAAGCTTCCAACCCTGGACATGTGCAAGGCAGTAAAATTGGCCCTTCACGTAGCTGGATGTCATCTCTGCAGCGCATCTATGAAGCTTTGAAGAAGATTCCATGCATCTTTTCTCCAAGTGTTTGA 1302 0.4301 TEIPPPPPLFISSIIIIPFSLCCVRFVALVSLRSDALLFTDSLLEPSNMERFVGGKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPNIKWSGVDGEDNVLVIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICQKKLSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREVLPPLSPVPGSSNSRAIPMDIDNHKGLNAYSGHAKECIRAGDATGSGVKIQFKPPVGKNYENPLDKNIFGEANIPSTSFSPASTSKRNSLKQSLPAEASNPGHVQGSKIGPSRSWMSSLQRIYEALKKIPCIFSPSV 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2480 433 MobiDBLite consensus disorder prediction 373 408 - -
Aed5g2480 433 ProSiteProfiles Protein kinase domain profile. 57 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g2480 433 Gene3D Phosphorylase Kinase; domain 1 47 133 - -
Aed5g2480 433 PANTHER CASEIN KINASE-RELATED 49 161 - -
Aed5g2480 433 PANTHER CASEIN KINASE-RELATED 161 299 - -
Aed5g2480 433 PANTHER CASEIN KINASE-RELATED 307 406 - -
Aed5g2480 433 SUPERFAMILY Protein kinase-like (PK-like) 53 294 IPR011009 -
Aed5g2480 433 Gene3D Transferase(Phosphotransferase) domain 1 158 302 - -
Aed5g2480 433 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3-RELATED 161 299 - -
Aed5g2480 433 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3-RELATED 307 406 - -
Aed5g2480 433 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Aed5g2480 433 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3-RELATED 49 161 - -
Aed5g2480 433 SMART serkin_6 57 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2480 Aed-Chr5 25979031 25985928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2480 41 92 Miscellaneous Gene Families AT3G23000 45.000 1.79e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2480 K08960 - gmx:100800342 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2480 5 25979031 25985928 Aed5g2480 5 25979031 25985928 ECH
Aed5g2480 5 25979031 25985928 Aed7g0103 7 697573 704252 PCT