Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2478 ATGGCTTATTCTTCTTCGATTCGACCAAGTCTCTCATCTCTTCGGTTCTCAACACCTTTCTCTCTTTCACTCTTCAACCCTTCTCCCCGTATCTCTCTCTCTCTTCTTCCTTCTCCCTCTGTATCCCAATCCAATAGTTTTGGCCTCAAAGCTTCCAGAGTGTTGAGACAATATGGTAATTCCCCGAGAGTCATGGCATCAGGGGACGTGTCTCAATCAGTTGCGGCTGCTTCCCCAGAAAACGTGCTTGAGTGGCTTCTCAGAAAGAGGGACATACCAGAGGAGAAATATACTAATGCCTTTCTTGGATATGGGCCCGAAGACTCACACTTTGTTATTGAACTGACTTACAATTATGGAGTTGACAAGTATGATATTGGATCTGGATTTGGCCATTTTGGTATTGCTGTTGATGATGTTGCAAAAGCAGTGGAGCTAATAAGAGCTAAGGGTGGCAAAATAACTAGAGAGCCTGGTCCTGTCAAGGGAGGGCGTTCAGTAATTGCATTTATTGAAGATCCAGATGGTTACAAATTTGAACTTATAGAAAGAGGTCCCACTCCTGAACCCTTGTGCCAAGTAATGCTTCGAGTGGGTGATCTTAATCGTTCCATAGAATTTTACGAGAAGGCATTTGGTATGGAGCTGCTCCGTACACGAGACAATCCAGAATACAAGTATACCATAGCAATGCTGGGTTATGGCCCAGAAGATAAAAGCACTGTTCTGGAGTTGACTTACAATTATGGAGTCACTGAATACGATAAAGGAAATGCTTATGCTCAGCTTGCATTAGGCACAGATGATGTGTACAAAACTGCAGAAGCGATTAAACTAGCTGGAGGAAAGATTACTCGGGAACCTGGACCATTACCTGGTATCAACACAAAAATTACTGCATGCTTGGATCCTGATGGCTGGAAGTCGGTTTTTGTAGATAATGTTGATTTTCTAAAGGAGTTGGAGTAG 969 0.4314 MAYSSSIRPSLSSLRFSTPFSLSLFNPSPRISLSLLPSPSVSQSNSFGLKASRVLRQYGNSPRVMASGDVSQSVAAASPENVLEWLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGSGFGHFGIAVDDVAKAVELIRAKGGKITREPGPVKGGRSVIAFIEDPDGYKFELIERGPTPEPLCQVMLRVGDLNRSIEFYEKAFGMELLRTRDNPEYKYTIAMLGYGPEDKSTVLELTYNYGVTEYDKGNAYAQLALGTDDVYKTAEAIKLAGGKITREPGPLPGINTKITACLDPDGWKSVFVDNVDFLKELE 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2478 322 TIGRFAM glyox_I: lactoylglutathione lyase 191 314 IPR004361 GO:0004462|GO:0046872
Aed5g2478 322 TIGRFAM glyox_I: lactoylglutathione lyase 86 193 IPR004361 GO:0004462|GO:0046872
Aed5g2478 322 CDD GlxI_Ni 191 312 - -
Aed5g2478 322 ProSitePatterns Glyoxalase I signature 1. 193 214 IPR018146 GO:0004462|GO:0046872
Aed5g2478 322 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 190 314 IPR037523 -
Aed5g2478 322 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 59 184 IPR037523 -
Aed5g2478 322 Gene3D - 80 185 IPR029068 -
Aed5g2478 322 Gene3D - 187 322 IPR029068 -
Aed5g2478 322 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 191 312 IPR029068 -
Aed5g2478 322 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 87 189 IPR029068 -
Aed5g2478 322 PANTHER LACTOYLGLUTATHIONE LYASE 86 322 - -
Aed5g2478 322 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 193 308 IPR004360 -
Aed5g2478 322 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 105 181 IPR004360 -
Aed5g2478 322 PANTHER LACTOYLGLUTATHIONE LYASE, CHLOROPLASTIC-RELATED 86 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2478 Aed-Chr5 25966248 25970724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2478 193 311 Calmodulin-binding Proteins AT1G08110 27.586 2.55e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2478 K01759 - gmx:100780463 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2478 5 25966248 25970724 Aed5g2478 5 25966248 25970724 ECH
Aed5g2478 5 25966248 25970724 Aed7g0101 7 678058 681719 PCT