Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2472 ATGGGTGAGCTACCTAGCTCATCATCCGCTTCCACTCGCAAGCACTCATCTTCGGAGGCCCATTTAGCCGGCCCCGATCACAAAAAGCCCAAGCAGGCCCGAGATAGCAGCAGCAAGCACCCCGTCTACAGAGGGGTCCGAATGCGGGCCTGGGGTAAGTGGGTTTCCGAAATCCGCGAGCCCAGAAAGAAGAACCGGATCTGGCTCGGCACCTTCGCCACCGCCGAGATGGCCGCGCGTGCCCACGACGTGGCGGCGCTCGCCATCAAAGGCAACTCCGCCATTCTGAACTTCCCCGAACTCGCGGGCTCCCTGCCCCGGCCAGACTCCAACACGCCAAGGGACGTTCAGGCCGCCGCAGCCAAAGCCGCCGCCATGGAGTTTAACGATGCTCCGACGACGCCTTCGCTGTCGCAATCGTCATCTTCGTCGTCATTGGCGGTTTCTTCTTCCTCCGGCGATGATGACTCGGAGGAGCTGGGGGAGATAGTGGAGCTGCCGAGCCTGGGGACGAGCTTCGAAATACCCGACCCGAGTGGGGAGTTGGTGTTTATGGACCCGTGGCCCTATTCTCAGGCGTGGAGTCAGGGCATTTATGAAGAGAGGGAGTGTGGGGGGTATTTTATTGGGGATCAAATTTCAATGCAGGAATCAGAGAGCATGATTCTTTGTGGCTTTGAGGGCTCATTGTGGCAGCATTAA 702 0.5912 MGELPSSSSASTRKHSSSEAHLAGPDHKKPKQARDSSSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALAIKGNSAILNFPELAGSLPRPDSNTPRDVQAAAAKAAAMEFNDAPTTPSLSQSSSSSSLAVSSSSGDDDSEELGEIVELPSLGTSFEIPDPSGELVFMDPWPYSQAWSQGIYEERECGGYFIGDQISMQESESMILCGFEGSLWQH 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2472 233 MobiDBLite consensus disorder prediction 19 42 - -
Aed5g2472 233 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Aed5g2472 233 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Aed5g2472 233 MobiDBLite consensus disorder prediction 131 154 - -
Aed5g2472 233 MobiDBLite consensus disorder prediction 1 42 - -
Aed5g2472 233 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Aed5g2472 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 232 - -
Aed5g2472 233 MobiDBLite consensus disorder prediction 131 159 - -
Aed5g2472 233 MobiDBLite consensus disorder prediction 1 18 - -
Aed5g2472 233 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Aed5g2472 233 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Aed5g2472 233 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Aed5g2472 233 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 9 232 - -
Aed5g2472 233 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Aed5g2472 233 CDD AP2 43 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2472 Aed-Chr5 25938117 25938818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2472 8 200 AP2-EREBP Transcription Factor Family AT5G25810 56.000 7.25e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed5g2472 AP2 6.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2472 K09286 - gmx:100778201 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2472 5 25938117 25938818 Aed5g2472 5 25938117 25938818 ECH
Aed5g2472 5 25938117 25938818 Aed7g0084 7 582640 583260 PCT