Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2464 ATGGGGCGGCGTAAGATTGAGATTACGGAGGTGAAGGATCCAAACACCAAACAGGTTACGTTTTCTAAGCGTCGAACAGGGTTGTTCAAAAAAGCCAATGAACTGTCCATTCTGTGTGGAGCAGAAGTTGCTATTGTTGTGTTTTCTCCTGGGGACAAGCCTTACTCTTTTGGCCACCCTAGTGTCGATGCTGTTGCTAACAAGTTCCTTAATCCGAATGGCACACCATCCAATGCTGTTGCTGTTGTTGATGAGGAACACGTTAATGGTCTCAATCTGCATCTGTCTGATGTTCAAACCGAGGTTCTTGATGAGCAAAAGAGAACCGTGGAGCTTGAGAAGATGCTCCAGCAGAATGGAGTCAAGCTTTCTCCCGATGTAGAATTGAAGGGTTCTTTTTTGCAGGTCCACCAAAAGGTGCAGGACTTCTTTGGTGAAATCGATGTTGCTAACTATATGTTGCTCCTTGCCAAAGCACCAGTCGTCGGAATAACTGAACAAGTTCCTCCTACTAAGAAAAGAAGAATCAAATGA 534 0.4476 MGRRKIEITEVKDPNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGDKPYSFGHPSVDAVANKFLNPNGTPSNAVAVVDEEHVNGLNLHLSDVQTEVLDEQKRTVELEKMLQQNGVKLSPDVELKGSFLQVHQKVQDFFGEIDVANYMLLLAKAPVVGITEQVPPTKKRRIK 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2464 177 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 167 - -
Aed5g2464 177 PANTHER MADS BOX PROTEIN 2 167 - -
Aed5g2464 177 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Aed5g2464 177 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Aed5g2464 177 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aed5g2464 177 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed5g2464 177 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed5g2464 177 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed5g2464 177 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Aed5g2464 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Aed5g2464 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2464 Aed-Chr5 25891229 25891762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2464 1 71 Type I MADS-box Gene Family AT3G66656 70.423 9.09e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed5g2464 SRF-TF 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2464 - - gmx:100804079 201.445