Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2463 ATGGATAACGACGACGTTAACCTTACAATTTCAGAGAGAAACAACAATTACAATTTCATAGATTTGGATGTTTTTGATCTAGACGAGGCTCTTGCGGTGGTGGACGGAGAATCACGGCGTCTATTTGCAGCGTGGAAGACCTTCGTTTCGAACTTGCCGACGGTCAACGACGTGAGGAGGGATGAAGTTTGCTCCGTTTGTATGGAAGGGTTTAGCCATGGGGAAAACAAACGAGTCCCGTGCGGCCACGTGTATCACTCAAACTGCATCACTCTCTGGTTGGAGCACTGCAACTCTTGTCCGCTTTGCCGCTGCCATATCCCCCTTTTCTAA 333 0.4835 MDNDDVNLTISERNNNYNFIDLDVFDLDEALAVVDGESRRLFAAWKTFVSNLPTVNDVRRDEVCSVCMEGFSHGENKRVPCGHVYHSNCITLWLEHCNSCPLCRCHIPLF 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2463 110 SUPERFAMILY RING/U-box 57 108 - -
Aed5g2463 110 ProSiteProfiles Zinc finger RING-type profile. 64 104 IPR001841 -
Aed5g2463 110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 109 IPR013083 -
Aed5g2463 110 SMART ring_2 64 103 IPR001841 -
Aed5g2463 110 Pfam Ring finger domain 64 104 IPR001841 -
Aed5g2463 110 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 23 107 - -
Aed5g2463 110 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 23 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2463 Aed-Chr5 25882956 25883288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2463 18 108 C3H Transcription Factor Family AT5G01980 41.237 9.48e-14 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2463 - K22378 gmx:102669154 202.986