Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2462 ATGCGTGTGCCATCAACAAAACTTACATTTTCCTTACACGTGTCGTTTTCTCCACTCTCCTTTCTGCTCCTTTTATCGTCTCCTTCCTCACTTCTTTTTCTTCCCCTCCACTCTCCATTTCCCAACTACGACACCGTCTCTTTCGTTATGGAAGACGACGATGACCAACTCGAACGATTCGACTCCGAGCTCGCCTCCACGACTTCCATTTCCTCCATCAGCAGCGGCTCCGGCGAGATTCCTCCCATCGCTGTCACCGAGGCGGTTCTCGCACCGCTGTTGCTCCACCGCGCGGGGTCCAATGACGGCGAGACGCCTGCGGCGAAGGAGAAGTGCGTGGGAAGGAGTAACAAGGGAGTGAGTTGGGGACACACTTCGGTGATTGGGAGAAGGAAGGAGATGGAGGATGCCGTCGCCGTTATTCCGGGATTCATGTCTCGCACGTGCGTTCACGTCGGCGGTTGTACGGCTCCCGGTTCTAGATCCTCCGGGGAGATCGCTCCAGTTCATTTCTTTGGCGTTTACGATGGCCACGGTGGCTCTCAGGTGGCTAAGTTTTGTGCGAAACGGATGCACGATGTTATAGCAGAGGAGTGGGATCGAGAAATGGGAGGTGGCGCTGAGTGGCAGAGAAGATGGGAAGCTGTACTTGGTAACAGTTTTGAGAGGACTGACAATGAAATCCTATCAGACGCAGTTGCACCAGAAATGGTAGGATCTACTGCCTCTGTGGTGGTTCTATCTGGTTGCCAAATTATTACATCCAACTGCGGCGACTCAAGGGTTGTTCTTTGCCGCAGGACACAAACAATCCCCTTGACAGTGGATCAAAAGCCGGATAGACAAGATGAACTCTTGAGAATTGAAGAAGGAGGAGGAAAAGTCATAAACTGGAATGGATCTAGGGTGTTTGGTGTTCTTGCTATGTCCAGGGCCATAGGTGATCGGTACTTGAGACCATGGATTATTCCCGTGCCAGAGATAAGTTTCACAGCAAGAACTGACGAGGATGAGTGCTTAGTTTTGGCAAGTGATGGACTTTGGGATGTAATGACTAATGAAGAGGTTGGAGAAGTAGCACGCCACATTCTTAGAAGGCGCCGCAGATCATTGTCAATGGAGGAAACATCTCCTGCACAAGTTGTTGCCAACAGCCTGACTGAAATTGCATATGGTAGAAATAGTATAGATAACATTTCAATCATAGTCGTTGATCTGAAATCAAAGAGAAAACGTCAGCAAAGGCCTCCTTTAATTTCCTAA 1263 0.4964 MRVPSTKLTFSLHVSFSPLSFLLLLSSPSSLLFLPLHSPFPNYDTVSFVMEDDDDQLERFDSELASTTSISSISSGSGEIPPIAVTEAVLAPLLLHRAGSNDGETPAAKEKCVGRSNKGVSWGHTSVIGRRKEMEDAVAVIPGFMSRTCVHVGGCTAPGSRSSGEIAPVHFFGVYDGHGGSQVAKFCAKRMHDVIAEEWDREMGGGAEWQRRWEAVLGNSFERTDNEILSDAVAPEMVGSTASVVVLSGCQIITSNCGDSRVVLCRRTQTIPLTVDQKPDRQDELLRIEEGGGKVINWNGSRVFGVLAMSRAIGDRYLRPWIIPVPEISFTARTDEDECLVLASDGLWDVMTNEEVGEVARHILRRRRRSLSMEETSPAQVVANSLTEIAYGRNSIDNISIIVVDLKSKRKRQQRPPLIS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2462 420 Pfam Protein phosphatase 2C 130 399 IPR001932 -
Aed5g2462 420 CDD PP2Cc 123 406 IPR001932 -
Aed5g2462 420 ProSitePatterns PPM-type phosphatase domain signature. 171 179 IPR000222 GO:0043169
Aed5g2462 420 PANTHER PROTEIN PHOSPHATASE 2C 6-RELATED 86 415 - -
Aed5g2462 420 PANTHER ALPHABET, ISOFORM E-RELATED 86 415 - -
Aed5g2462 420 Gene3D - 111 416 IPR036457 -
Aed5g2462 420 ProSiteProfiles PPM-type phosphatase domain profile. 121 406 IPR001932 -
Aed5g2462 420 SMART PP2C_4 111 404 IPR001932 -
Aed5g2462 420 SUPERFAMILY PP2C-like 114 407 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2462 Aed-Chr5 25874955 25880150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2462 122 416 PP2C-type Phosphatase Gene Family AT4G26080 50.159 9.23e-98 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2462 K14497 - gmx:100793293 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2462 5 25874955 25880150 Aed5g2462 5 25874955 25880150 ECH