Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2454 ATGCCTTCACGAGACACGAGTGTGTCAGATACTGAGAATTTGATTCTACCAAGGTTTCACGACACGCACATGGGGAGAGCCATGAGGTGGTTGAAGGGGTTGTTTGGGTTAAAGAGAGACAGAGAGCGGTGTCACTCAGACAGAGATTCCAGAGGTTTATGCCATAATCCAACCACCATTCCACCCAATATTTCACCTGCAGAGGCCGCTTGGCTGCAATCCTTTTACTCTGAAACTGAGAAGGAGCAGAACAAGCATGCCATTGCAGTTGCCGCAGCCACTGCAGCAGCAGCAGATGCTGCCGTGGCTGCGGCTCAGGCCGCGGTGGCAGTTGTTAGACTAACCAGCCAGGGTGGTGGTGGACAGGAAAGGTCCGCTGTTGTCAAGATTCAAACTTTCTTCAGAGGATACTTGGCGAGGAAGGCATTGAGAGCCTTAAAAGGATTGGTGAAGTTACAAGCACTCGTGAGAGGGTACTTGGTGAGGAAGCAAGCAGCAGCAACCCTGCACAGTATGCAAGCTCTAATTAGAGCTCAAGCAACAGTAAGGTCTAAGAAATCTCGCGGAGCACGAAGATCCATGGTACTGGTACTACACAGCATAGATTTTAGATTCCTGGACACTGTTATGGAGAGATTTGATGACATAGCTCCCATCCACAGCAGAAGGCTATCATCTTCTTTTGATGGAAACAGTGTTGATGGAAGCCCCAAAATAGTAGAAGTGGACACTGGGAGGCCAAAGTCAAGGTCTCGAAGGAGCAACACTTCAATGTCAGATTATGGCGATGAGCCACCATCATCATCATTGGCTCATTTGTCCATACAACAAAACCACGAGTCATCGGAATGGGGCTTAACAGGAGAAGAGTGCAGGTTCTCAACAGCACAAAGCACTCCACGCTTCACTAACTCGTGTACTTGTGGTGGATCTGTTGTTGTGACACCAAAAAGTGTTTGCACCGAAAACTTGTTCTATGGGCAGTACCACCAGAATTATCCACACTACATGTCGAACACTCAGTCTTTCAAGGCCAAACTGAGGTCTCATAGTGCTCCAAAGCAACGCCCCGATCCAGGGCCAAAGAAGAGGCTTTCCCTCAATGAGATGATGGAGTCTAGGACTAGTTTAAGTGGCGCTACAATGCAAAGCTCTTGCTCACAAATTCAAGATGCTGTTAATTTTAAGAATGCTGTCATGAGTAAGCTTCACAAGTCCACAGACATTCACTTTTCCAACCATAGGAGGTGGTAA 1254 0.4769 MPSRDTSVSDTENLILPRFHDTHMGRAMRWLKGLFGLKRDRERCHSDRDSRGLCHNPTTIPPNISPAEAAWLQSFYSETEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGGGGQERSAVVKIQTFFRGYLARKALRALKGLVKLQALVRGYLVRKQAAATLHSMQALIRAQATVRSKKSRGARRSMVLVLHSIDFRFLDTVMERFDDIAPIHSRRLSSSFDGNSVDGSPKIVEVDTGRPKSRSRRSNTSMSDYGDEPPSSSLAHLSIQQNHESSEWGLTGEECRFSTAQSTPRFTNSCTCGGSVVVTPKSVCTENLFYGQYHQNYPHYMSNTQSFKAKLRSHSAPKQRPDPGPKKRLSLNEMMESRTSLSGATMQSSCSQIQDAVNFKNAVMSKLHKSTDIHFSNHRRW 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2454 417 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 24 407 - -
Aed5g2454 417 SMART iq_5 145 166 IPR000048 GO:0005515
Aed5g2454 417 SMART iq_5 122 144 IPR000048 GO:0005515
Aed5g2454 417 Pfam IQ calmodulin-binding motif 150 164 IPR000048 GO:0005515
Aed5g2454 417 Pfam IQ calmodulin-binding motif 124 144 IPR000048 GO:0005515
Aed5g2454 417 MobiDBLite consensus disorder prediction 351 367 - -
Aed5g2454 417 Pfam Protein of unknown function (DUF4005) 300 388 IPR025064 -
Aed5g2454 417 Gene3D - 122 164 - -
Aed5g2454 417 PANTHER IQ-DOMAIN 5-RELATED 24 407 - -
Aed5g2454 417 ProSiteProfiles IQ motif profile. 123 151 IPR000048 GO:0005515
Aed5g2454 417 ProSiteProfiles IQ motif profile. 147 174 IPR000048 GO:0005515
Aed5g2454 417 MobiDBLite consensus disorder prediction 346 367 - -
Aed5g2454 417 MobiDBLite consensus disorder prediction 235 270 - -
Aed5g2454 417 MobiDBLite consensus disorder prediction 251 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2454 Aed-Chr5 25819478 25821114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2454 24 382 IQD Protein Family AT3G16490 53.050 9.19e-92 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2454 - - gmx:100800892 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2454 5 25819478 25821114 Aed5g2454 5 25819478 25821114 ECH