Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2453 ATGAGAATGTCAAATTTGGTTTTTATTTTCTATGGTTTAGTAGTTATTCTTCTTCTACAAAATCCCAGTGCAACACAATGCCATACCAAGGGAATTCAGCCTAAGGCAGGGAATGGTTTATCCCCCAATATGACCAGAGTCCAATTTTCAGAAGAACAGTTCATGAAATGGGTGAGATATGTAGGTGGCCTCAAACATTCTGTCTTTAGGACAGCGATGAATAAGCTTTTTCCTTCTCACACTTTGCACGTTTCTAAGAAGCATAGTAAAGGAGGCTTTTCGTCAATTCAAGCAGCCATTGATTCCCTCCCAATCATCAATGTAGTGAGAGTGGTAATTAAGGTGCATGCAGGGGTTTACACGGAGAAAGTTAGCATTTCTCCTTTAAAATCCTATATAACAATACAAGGAGAAGGTGCAGATAAGACGATTGTTCAATGGGGTGACACTGCTCAAAGCCAACCATTAGGAACCTTTGGTTCTGCAACATTTGCTGTGAATTCACCTTATTTCATAGCCAAGAATATCACATTCAAAAACACAGCCCCAATTCCAGCACCAGGAGCAGTTGGAAAGCAGGGAGTGGCATTTAGAATATCAGGAGATAATGCAATATTTCTAGGCTGCAAATTCTTAGGAGCACAGGACACACTCTATGATCATTTTGGTAGGCATTACTATAAGGATTGCTATATTGAAGGGTCTGTTGATTTCATATTTGGCAACGCTCTCTCTCTCTTTGAGGGATGTCACGTGCATGCTATAGCGCAAGTTACAGGGGCCCTAACAGCGCAAGGAAGGAGCAGTTTATTAGAAGACACGGGTTTCTCGTTTGTGCACTGTAAGGTCACGGGGTCAGGGGCACTTTACCTTGGAAGGGCTTGGGGTCCCTTTTCAAGTGTTGTCTTTGCTTACACTTACATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTATTCTATGGACAGTACAAATGCACAGGACCAGGAGCAAGCTACGCGGGGAGAGTATCATGGTCAAGGGAGCTCACTGATGAGGAAGCTAAGCCATTTATTTCACTTAGCTATATTGATGGCTCTCAATGGATCACTGTCTCTCTTTAA 1134 0.4268 MRMSNLVFIFYGLVVILLLQNPSATQCHTKGIQPKAGNGLSPNMTRVQFSEEQFMKWVRYVGGLKHSVFRTAMNKLFPSHTLHVSKKHSKGGFSSIQAAIDSLPIINVVRVVIKVHAGVYTEKVSISPLKSYITIQGEGADKTIVQWGDTAQSQPLGTFGSATFAVNSPYFIAKNITFKNTAPIPAPGAVGKQGVAFRISGDNAIFLGCKFLGAQDTLYDHFGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQVTGALTAQGRSSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSSVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASYAGRVSWSRELTDEEAKPFISLSYIDGSQWITVSL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2453 377 Gene3D - 78 376 IPR012334 -
Aed5g2453 377 PANTHER PECTINESTERASE 3 376 - -
Aed5g2453 377 Pfam Pectinesterase 87 369 IPR000070 GO:0030599|GO:0042545
Aed5g2453 377 ProSitePatterns Pectinesterase signature 2. 232 241 IPR033131 -
Aed5g2453 377 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 3 376 - -
Aed5g2453 377 SUPERFAMILY Pectin lyase-like 78 374 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2453 Aed-Chr5 25815589 25817776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2453 87 376 Carbohydrate Esterase AT1G05310 48.993 3.46e-100 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2453 K01051 - gmx:100793773 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2453 5 25815589 25817776 Aed5g2453 5 25815589 25817776 ECH