Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2445 ATGGATAACAACTGGATCCTGAGTTTTCAGCTTCTCCTCCTCCTGGTCCATCCAAATGCAGCAAAAGGGGCCATTAGTGTGGGTGTTGGTGTTGGTGGCATAGGTGTTGGCATTGGCATTGGCATTGGAGGCAGTGGTGGTGGATCAGGGTCTAACCTGAACAATGCCTTCACTGCACTCCAGGCATGGAAATCTGCCATCACTGATGACCCACTGAAGATTTTGGATACTTGGGTTGGCCCCAATGTGTGTTCCTACAAAGGTGTCTTCTGTGCTAATTCTCAGGGGATTGTGACAACAGCAGCAAGTGAGTCTTCTGTTGTTGCAGGAATAGATCTGAACCATGCAAATCTCCAAGGGACTCTTGTGAAACACCTTTCTTTCCTCTCTGATATCACTCTTTTCCATCTCAACAGCAACAGGTTCTCTGGCTCAGTCCCTGACACATTCAGAGACCTCACTTCACTCCAAGAGTTGGACCTCAGCAATAACCAACTATCGGGGTCTTTCCCCATGGCCACTCTATCCATGCCAAACCTCGACTACTTGGACCTCAGATTCAACAACTTCTCAGGCCAACTTCCCGATGAACTCTTCAACAAGAAACTCGATGCAATATTCCTCAACAACAACAACTTCGGAGGGGAAATCCCAGACAATCTGGGAAACTCACCCGCCTCAGTCATCAACTTGGCCAACAACAAATTAAGCGGAAACATCCCTTTCAGCTTTGGCTTCATGAGTTCAAGACTTAAGGAGATTCTCTTCCTTAACAACCAGTTAACAGGTTGCATTCCTGAAGGAGTAGGGATCTTCACAGAGATGCAAGTCTTTGATGTGAGTTTCAACTCACTCATGGGTCATTTGCCAGACACGATGAGTTGCTTGGAAGACATAGAGGTTCTGAATTTGGCACATAACAAGCTCTCAGGGGAATTATCCGATGTGGTATGCTCCTTGAAAAGCCTATTGAATCTGAGCGTTGCTTACAATTTCTTCTCGGGGATCAGCCAGGAATGTTCAAGGCTATTCAATGTGGGGTTTGATTTCTCGGATAATTGTATTCCTGGAAAGGGTATGCAAAGACCCCAACCAGACTGCTCTATAATCCCTGGTGGTAGTCTCAATTGTCTTAGAATTCCCACTCCAAACCCTCTTGTATGCGCCGCACGTTCCTCTTCTCCCTGA 1188 0.4655 MDNNWILSFQLLLLLVHPNAAKGAISVGVGVGGIGVGIGIGIGGSGGGSGSNLNNAFTALQAWKSAITDDPLKILDTWVGPNVCSYKGVFCANSQGIVTTAASESSVVAGIDLNHANLQGTLVKHLSFLSDITLFHLNSNRFSGSVPDTFRDLTSLQELDLSNNQLSGSFPMATLSMPNLDYLDLRFNNFSGQLPDELFNKKLDAIFLNNNNFGGEIPDNLGNSPASVINLANNKLSGNIPFSFGFMSSRLKEILFLNNQLTGCIPEGVGIFTEMQVFDVSFNSLMGHLPDTMSCLEDIEVLNLAHNKLSGELSDVVCSLKSLLNLSVAYNFFSGISQECSRLFNVGFDFSDNCIPGKGMQRPQPDCSIIPGGSLNCLRIPTPNPLVCAARSSSP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2445 395 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 393 - -
Aed5g2445 395 ProSiteProfiles Leucine-rich repeat profile. 155 176 IPR001611 GO:0005515
Aed5g2445 395 PANTHER LRR/EXTENSIN 1 393 - -
Aed5g2445 395 Gene3D Ribonuclease Inhibitor 54 225 IPR032675 -
Aed5g2445 395 PRINTS Leucine-rich repeat signature 156 169 - -
Aed5g2445 395 PRINTS Leucine-rich repeat signature 296 309 - -
Aed5g2445 395 SMART LRR_typ_2 320 343 IPR003591 -
Aed5g2445 395 SMART LRR_typ_2 153 176 IPR003591 -
Aed5g2445 395 SMART LRR_typ_2 129 152 IPR003591 -
Aed5g2445 395 SMART LRR_typ_2 177 201 IPR003591 -
Aed5g2445 395 Pfam Leucine rich repeat N-terminal domain 54 91 IPR013210 -
Aed5g2445 395 Gene3D Ribonuclease Inhibitor 226 346 IPR032675 -
Aed5g2445 395 SUPERFAMILY L domain-like 57 345 - -
Aed5g2445 395 Pfam Leucine rich repeat 135 190 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2445 Aed-Chr5 25774380 25775567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2445 52 368 Leucine-rich Repeat extension Gene Families AT3G24480 48.896 3.74e-99 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2445 - - gmx:100786358 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2445 5 25774380 25775567 Aed5g2445 5 25774380 25775567 ECH