Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2444 ATGAAGATCGAGGAATTGGACGATGGAGAGTGTAGTAGGGACGAGGTAGAGAAGTTTGAGAGGCAGATTGTGAGCGTTGATGCGAAGAGAGCGTTGGTTGGAGCAGGTGCTCGGATCCTGTTCTATCCCACACTTTTGTATAATGTGCTTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAGGACGTTCCTCACTTGAAGAATCTTGGTGTGGGTGGTGTGATTACTCTCAATGAGCCCTATGAAACCTTGGTGCCATCTTCGTTGTATCGGGCTCACGGGATTGATCATTTGGTCATTCCTACCAGAGATTATCTCTTTGCCCCCTCATTTGTGGACATCGACCGGGCTGTGCAGTTCATTCATCAGAATGAAACCTGTGGTAAAACTACTTATGTTCACTGTAAAGCTGGCCGCGGGAGGAGTACAACAATTGTGCTTTGTTATCTGGTTGAATACAAGCACATGACACCTGCTGCTGCCCTGGATTATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCCCAGTGGAAGGCTGTTCAAAACTATAACAAGCAAAGACCTTCTCCTTTACCATACTCCCCCTCTGGGGATGCCGTACTTATAACCAAAGCTGATCTTGAAGGCTATCATAGCACATGTGATGCTGGCATGGATCTGGCGATTGTTCCTAAAATGCCAAAGACTAAGCCCATGATTGCAAGATTATCTTGCCTGTTTGCATCCTTAAAAGTATCTGGTAGTAGTGTACCAATGACCAGGCGGCTGCCGGTTTCTGAGTCTCGGGCTTGCTAA 849 0.4711 MKIEELDDGECSRDEVEKFERQIVSVDAKRALVGAGARILFYPTLLYNVLRNKIEAEFRWWDQIDEFLLLGAVPFPKDVPHLKNLGVGGVITLNEPYETLVPSSLYRAHGIDHLVIPTRDYLFAPSFVDIDRAVQFIHQNETCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPAAALDYVRSRRPRVLLAPSQWKAVQNYNKQRPSPLPYSPSGDAVLITKADLEGYHSTCDAGMDLAIVPKMPKTKPMIARLSCLFASLKVSGSSVPMTRRLPVSESRAC 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2444 282 Pfam Dual specificity phosphatase, catalytic domain 84 203 IPR000340 GO:0008138|GO:0016311
Aed5g2444 282 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Aed5g2444 282 CDD PTPMT1 60 204 IPR044596 GO:0004721
Aed5g2444 282 PANTHER - 1 282 - -
Aed5g2444 282 SMART dsp_5 63 204 IPR020422 GO:0006470|GO:0008138
Aed5g2444 282 PANTHER OS01G0739200 PROTEIN 1 282 - -
Aed5g2444 282 Gene3D Protein tyrosine phosphatase superfamily 60 206 IPR029021 -
Aed5g2444 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 196 IPR000387 GO:0016311|GO:0016791
Aed5g2444 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 207 IPR020422 GO:0006470|GO:0008138
Aed5g2444 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 54 203 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2444 Aed-Chr5 25767713 25770095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2444 4 270 Protein tyrosine phosphatase (PTP) family AT2G35680 51.768 8.17e-100 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2444 - - gmx:100817410 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2444 5 25767713 25770095 Aed5g2444 5 25767713 25770095 ECH