Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2443 ATGAATAAGATCAACAACTTGAGTTGTGTCAGGAGCTCTGATCTCATAGATGCCAAGCTCGAAGAGCATCAACTGTGTGGATCCAAACAGTGCCCCGGTTGTGGTCACAAATTTGAAGGGAAGCCGGACTGGCTAGGTCTACCAGCGGGAGTGAAGTTTGATCCAACAGACCAAGAACTCATAGAACATCTTGAAGCCAAAGTAGAGGCAAAGAATATGAAATCACACCCTCTCATAGACGAGTTCATTCCAACTATTGAAGGAGAAGATGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGGTTAAGCAGACACTTCTTCCACAGGCCCTCAAAGGCATACACAACAGGGACACGAAAGAGGAGAAAGATTCAAAACGAATGCGACTTGCAAGGAGGGGAAACCCGATGGCACAAGACTGGTAAGACCAGACCAGTGATGGTGAATGGGAAACAAAAGGGTTGCAAGAAGATTCTAGTTCTGTACACCAACTTCGGGAAGAACAGAAAACCTGAAAAGACAAACTGGGTGATGCACCAGTACCATCTTGGGCAGCACGAGGAAGAGAAAGAGGGTGAGCTTGTGGTCTCAAAGATATTCTACCAGACACAACCCAGGCAATGCAATTGGTCGAGTGCCAGTGCCACAACCACAACCGGTGAAGGAGAACAACAACAATATGGAAGTGGGAGTTCTTCTACTTCTAACAGAGATGAAATGTCTGCTGTTGTTGGGGTCCCAGCTTCCATAACAACCTTCAACACTTCCTTGGTCGACATTCAACAACTCAAATCCGACCATTTTGGCTTCATCCCATTCAGAAAAGCCTTCGATCACGAGGTTGGAATAGGAGAAGCTTCCACAGCAAGAGAACTAATGCAACTGCAAGCATCAGGGTCATGCGATGAAGCACATCATCATCATCAACGTCAACATCAACAGCAACAGCAAAATGATGAGCATGCGCACCAACAACTTGCAACCACAGCCTTCCATATCAGTAGACCTTCGCTTCCAATCTCCACCATCATCTCTCCTCCACCCCTTCACCATGCATCCATTATCCTAGACGACAGCTCCTACCATGTCTCCACAATAATGCTCCAAAATGATAATTTCCAGCAACAACATCATAAACTCGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGGTGCACTTCAAATGATATCAAAGAGGAGTCATCCATTACAAACCCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTACTGGCCAGACCCTAGCAATCTGCAGGGTCATCGTGAGTAG 1317 0.4632 MNKINNLSCVRSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSSASATTTTGEGEQQQYGSGSSSTSNRDEMSAVVGVPASITTFNTSLVDIQQLKSDHFGFIPFRKAFDHEVGIGEASTARELMQLQASGSCDEAHHHHQRQHQQQQQNDEHAHQQLATTAFHISRPSLPISTIISPPPLHHASIILDDSSYHVSTIMLQNDNFQQQHHKLGGRSASGLEELIMGCTSNDIKEESSITNPQEAEWLKYSSYWPDPSNLQGHRE 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2443 438 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Aed5g2443 438 MobiDBLite consensus disorder prediction 304 329 - -
Aed5g2443 438 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 3 417 - -
Aed5g2443 438 MobiDBLite consensus disorder prediction 216 246 - -
Aed5g2443 438 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Aed5g2443 438 MobiDBLite consensus disorder prediction 307 323 - -
Aed5g2443 438 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Aed5g2443 438 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 417 IPR044799 GO:0003700
Aed5g2443 438 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2443 Aed-Chr5 25759429 25764385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2443 14 427 NAC Transcription Factor Family AT5G56620 54.279 4.48e-136 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed5g2443 NAM 2.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2443 - - gmx:100794811 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2443 5 25759429 25764385 Aed5g2443 5 25759429 25764385 ECH