Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2436 ATGTTGGGGGAGACCCACCGCGCAAATCCAACCGTACACGTGCCACCATGGCCACTCCTCCACGAATCCACGCCGGAGATATTTTCACCGTACACCGCCAATGCTATTGCTGATTACTCTCCGTACTCATTGCAAGAAGCACTGAGCGCGCTTCAGCACTGTGAATCCACCGATGCTGAGTCTGACTCGGAGTTTCCGTCTCGGGAACCGGAAGTCCCGGTGGATGCTTACTCTTGCGACCATTTCCGCATGTTCGAGTTCAAGATTCGGAGATGCGCACGTGGCAGGTCACATGACTGGACTGAGTGTCCGTACGCTCACCCCGGCGAGAAGGCTCGCCGTCGTGATCCCCGGAAGTATCACTACTCCGGCACGGCGTGCCCTGATTTTCGCAAGGGGAGTTGCAAGAAAGGTGACGCGTGCGAGTACGCGCATGGTGTCTTTGAGTGCTGGCTCCACCCCGCGCGCTACCGTACTCAGCCGTGCAAGGATGGCACCAGTTGTCGCCGGCGCGTGTGTTTCTTCGCGCACACGCCGGAACAACTCAGGGTTCTTCCACAGCAGAGTCCACGGAGCGCTGATTCCTACGACGGTTCTCCTTTGAGACACGCGATAGAGTCGTCGTGTGCAAAATCGCATCCGTTTGTGTCTTCTCCCGGTTCGGTGTCACCGCCGGTGGAGTCTCCTCCAATGTCGCCGATGACTCGTTCGGGGTCTGTGAGTGTTAACGAGATGGTGGCTTCGCTCAGGAACTTGCAACTTGGGAAAGTCAAGTCCTTGCCTTCTTCATGGAATGTTATGGGCTCTTCCGGGTTCGGGTCTCCCAGAGGACCCGTTATGATCCGACCCGGATTCATCAGCCTTCCCACGACACCGACCCAGGCTCCAACCCGCGGTGGGGTAAATTGTTTTGACCAGTGGGATCAGAGTTGCGAGGAGGAGCCCGTGATGGAGAGGGTGGAGTCTGGAAGAAACATAAGGGCGAGGATGTTTGAGAAGCTGAGCAAAGAGAATTATCTGGATGGATCGGGTTCGGGTCAAATCGGGGTTCCAGATCTTGGCTGGGTTTCGGACCTTGTCAGTCGCTGA 1089 0.5684 MLGETHRANPTVHVPPWPLLHESTPEIFSPYTANAIADYSPYSLQEALSALQHCESTDAESDSEFPSREPEVPVDAYSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSADSYDGSPLRHAIESSCAKSHPFVSSPGSVSPPVESPPMSPMTRSGSVSVNEMVASLRNLQLGKVKSLPSSWNVMGSSGFGSPRGPVMIRPGFISLPTTPTQAPTRGGVNCFDQWDQSCEEEPVMERVESGRNIRARMFEKLSKENYLDGSGSGQIGVPDLGWVSDLVSR 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2436 362 SMART c3hfinal6 121 147 IPR000571 GO:0046872
Aed5g2436 362 SMART c3hfinal6 156 179 IPR000571 GO:0046872
Aed5g2436 362 ProSiteProfiles Zinc finger C3H1-type profile. 122 148 IPR000571 GO:0046872
Aed5g2436 362 PANTHER UNKEMPT FAMILY MEMBER 7 360 IPR045234 -
Aed5g2436 362 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 126 146 IPR000571 GO:0046872
Aed5g2436 362 Gene3D - 122 185 - -
Aed5g2436 362 MobiDBLite consensus disorder prediction 212 238 - -
Aed5g2436 362 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2436 Aed-Chr5 25692604 25693692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2436 61 185 C2H2 Transcription Factor Family AT5G12850 65.672 3.16e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed5g2436 zf-CCCH 7.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2436 - - gmx:100808676 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2436 5 25692604 25693692 Aed5g2436 5 25692604 25693692 ECH